diff --git a/Cargo.lock b/Cargo.lock index 0d8b97c..e77178b 100644 --- a/Cargo.lock +++ b/Cargo.lock @@ -110,21 +110,6 @@ dependencies = [ "num-traits 0.2.15", ] -[[package]] -name = "arrayref" -version = "0.3.5" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0d382e583f07208808f6b1249e60848879ba3543f57c32277bf52d69c2f0f0ee" - -[[package]] -name = "arrayvec" -version = "0.4.11" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b8d73f9beda665eaa98ab9e4f7442bd4e7de6652587de55b2525e52e29c1b0ba" -dependencies = [ - "nodrop", -] - [[package]] name = "atty" version = "0.2.13" @@ -162,15 +147,6 @@ dependencies = [ "rustc-demangle", ] -[[package]] -name = "base64" -version = "0.10.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0b25d992356d2eb0ed82172f5248873db5560c4721f564b13cb5193bda5e668e" -dependencies = [ - "byteorder", -] - [[package]] name = "bio" version = "0.30.0" @@ -248,17 +224,6 @@ version = "2.3.3" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "630be753d4e58660abd17930c71b647fe46c27ea6b63cc59e1e3851406972e42" -[[package]] -name = "blake2b_simd" -version = "0.5.8" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5850aeee1552f495dd0250014cf64b82b7c8879a89d83b33bbdace2cc4f63182" -dependencies = [ - "arrayref", - "arrayvec", - "constant_time_eq", -] - [[package]] name = "bv" version = "0.11.0" @@ -313,18 +278,6 @@ version = "1.0.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "baf1de4339761588bc0619e3cbc0120ee582ebb74b53b4efbf79117bd2da40fd" -[[package]] -name = "chrono" -version = "0.4.9" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e8493056968583b0193c1bb04d6f7684586f3726992d6c573261941a895dbd68" -dependencies = [ - "libc", - "num-integer", - "num-traits 0.2.15", - "time", -] - [[package]] name = "clap" version = "2.33.0" @@ -355,12 +308,6 @@ version = "1.0.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "acbf1af155f9b9ef647e42cdc158db4b64a1b61f743629225fde6f3e0be2a7c7" -[[package]] -name = "constant_time_eq" -version = "0.1.4" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "995a44c877f9212528ccc74b21a232f66ad69001e40ede5bcee2ac9ef2657120" - [[package]] name = "crc32fast" version = "1.2.0" @@ -377,7 +324,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "a33c2bf77f2df06183c3aa30d1e96c0695a313d4f9c453cc3762a6db39f99200" dependencies = [ "cfg-if 1.0.0", - "crossbeam-utils 0.8.16", + "crossbeam-utils", ] [[package]] @@ -388,7 +335,7 @@ checksum = "ce6fd6f855243022dcecf8702fef0c297d4338e226845fe067f6341ad9fa0cef" dependencies = [ "cfg-if 1.0.0", "crossbeam-epoch", - "crossbeam-utils 0.8.16", + "crossbeam-utils", ] [[package]] @@ -399,21 +346,11 @@ checksum = "ae211234986c545741a7dc064309f67ee1e5ad243d0e48335adc0484d960bcc7" dependencies = [ "autocfg 1.0.1", "cfg-if 1.0.0", - "crossbeam-utils 0.8.16", + "crossbeam-utils", "memoffset", "scopeguard", ] -[[package]] -name = "crossbeam-utils" -version = "0.6.6" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "04973fa96e96579258a5091af6003abde64af786b860f18622b82e026cca60e6" -dependencies = [ - "cfg-if 0.1.9", - "lazy_static", -] - [[package]] name = "crossbeam-utils" version = "0.8.16" @@ -487,17 +424,6 @@ dependencies = [ "syn 1.0.11", ] -[[package]] -name = "dirs" -version = "1.0.5" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "3fd78930633bd1c6e35c4b42b1df7b0cbc6bc191146e512bb3bedf243fcc3901" -dependencies = [ - "libc", - "redox_users", - "winapi", -] - [[package]] name = "doc-comment" version = "0.3.1" @@ -953,12 +879,6 @@ dependencies = [ "rustc_version", ] -[[package]] -name = "nodrop" -version = "0.1.13" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2f9667ddcc6cc8a43afc9b7917599d7216aa09c463919ea32c59ed6cac8bc945" - [[package]] name = "num-complex" version = "0.2.3" @@ -1007,6 +927,15 @@ dependencies = [ "libc", ] +[[package]] +name = "num_threads" +version = "0.1.6" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "2819ce041d2ee131036f4fc9d6ae7ae125a3a40e97ba64d04fe799ad9dabbb44" +dependencies = [ + "libc", +] + [[package]] name = "object" version = "0.31.1" @@ -1259,7 +1188,7 @@ checksum = "4b8f95bd6966f5c87776639160a66bd8ab9895d9d4ab01ddba9fc60661aebe8d" dependencies = [ "crossbeam-channel", "crossbeam-deque", - "crossbeam-utils 0.8.16", + "crossbeam-utils", "num_cpus", ] @@ -1272,12 +1201,6 @@ dependencies = [ "rand_core 0.3.1", ] -[[package]] -name = "redox_syscall" -version = "0.1.56" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2439c63f3f6139d1b57529d16bc3b8bb855230c8efcc5d3a896c8bea7c3b1e84" - [[package]] name = "redox_syscall" version = "0.3.5" @@ -1287,18 +1210,6 @@ dependencies = [ "bitflags 1.2.1", ] -[[package]] -name = "redox_users" -version = "0.3.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4ecedbca3bf205f8d8f5c2b44d83cd0690e39ee84b951ed649e9f1841132b66d" -dependencies = [ - "failure", - "rand_os", - "redox_syscall 0.1.56", - "rust-argon2", -] - [[package]] name = "regex" version = "1.3.1" @@ -1317,17 +1228,6 @@ version = "0.6.12" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "11a7e20d1cce64ef2fed88b66d347f88bd9babb82845b2b858f3edbf59a4f716" -[[package]] -name = "rust-argon2" -version = "0.5.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4ca4eaef519b494d1f2848fc602d18816fed808a981aedf4f1f00ceb7c9d32cf" -dependencies = [ - "base64", - "blake2b_simd", - "crossbeam-utils 0.6.6", -] - [[package]] name = "rust-htslib" version = "0.36.0" @@ -1441,13 +1341,13 @@ dependencies = [ [[package]] name = "simplelog" -version = "0.5.3" +version = "0.12.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2e95345f185d5adeb8ec93459d2dc99654e294cc6ccf5b75414d8ea262de9a13" +checksum = "acee08041c5de3d5048c8b3f6f13fafb3026b24ba43c6a695a0c76179b844369" dependencies = [ - "chrono", "log", - "term", + "termcolor", + "time", ] [[package]] @@ -1592,20 +1492,18 @@ dependencies = [ "autocfg 1.0.1", "cfg-if 1.0.0", "fastrand", - "redox_syscall 0.3.5", + "redox_syscall", "rustix 0.37.13", "windows-sys", ] [[package]] -name = "term" -version = "0.5.2" +name = "termcolor" +version = "1.1.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "edd106a334b7657c10b7c540a0106114feadeb4dc314513e97df481d5d966f42" +checksum = "bab24d30b911b2376f3a13cc2cd443142f0c81dda04c118693e35b3835757755" dependencies = [ - "byteorder", - "dirs", - "winapi", + "winapi-util", ] [[package]] @@ -1658,13 +1556,31 @@ dependencies = [ [[package]] name = "time" -version = "0.1.42" +version = "0.3.23" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "db8dcfca086c1143c9270ac42a2bbd8a7ee477b78ac8e45b19abfb0cbede4b6f" +checksum = "59e399c068f43a5d116fedaf73b203fa4f9c519f17e2b34f63221d3792f81446" dependencies = [ + "itoa", "libc", - "redox_syscall 0.1.56", - "winapi", + "num_threads", + "serde", + "time-core", + "time-macros", +] + +[[package]] +name = "time-core" +version = "0.1.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "7300fbefb4dadc1af235a9cef3737cea692a9d97e1b9cbcd4ebdae6f8868e6fb" + +[[package]] +name = "time-macros" +version = "0.2.10" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "96ba15a897f3c86766b757e5ac7221554c6750054d74d5b28844fce5fb36a6c4" +dependencies = [ + "time-core", ] [[package]] @@ -1832,6 +1748,15 @@ version = "0.4.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "ac3b87c63620426dd9b991e5ce0329eff545bccbbb34f3be09ff6fb6ab51b7b6" +[[package]] +name = "winapi-util" +version = "0.1.5" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "70ec6ce85bb158151cae5e5c87f95a8e97d2c0c4b001223f33a334e3ce5de178" +dependencies = [ + "winapi", +] + [[package]] name = "winapi-x86_64-pc-windows-gnu" version = "0.4.0" diff --git a/Cargo.toml b/Cargo.toml index a050cb5..b28d0e5 100644 --- a/Cargo.toml +++ b/Cargo.toml @@ -14,7 +14,7 @@ clap = "*" rayon = "1.7" terminal_size = "*" human-panic = "1.1.5" -simplelog = "0.5.0" +simplelog = "0.12.1" log = "*" tempfile = "*" itertools = "0.8"