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• batch execution abilities

  Port over the logic from https://github.com/HopkinsIDD/flepiMoP/tree/main/flepimop/gempyor_pkg/src/gempyor/batch as a `flepimop2.job` module that handles job management tasks and has the ability to execute other `flepimop2` commands in various environments. Need to support `batch` modules so developers can write adaptors for their platform of choice (aws, gcloud, azure, slurm, etc.) as well as add a `flepimop2 batch` CLI that can execute another CLI command using a batch module. Notably want to punt on chaining jobs together for a future feature, but instead just focus on parallelizing one command at a time.

  No due date
  0% complete0 open0 closed

• Windows Support

  Preparation for the Insight Net annual meeting highlighted that `flepimop2` is geared towards unix development. Need to work on adding support for windows in the documentation, installation instructions, default skeleton commands, shell processing, etc. Will likely require some additional support.

  No due date
  0% complete0 open0 closed

• `flepimop2 build` CLI

  No due date

  •0/6 issues closed
  0% complete6 open0 closed

• `flepimop check` CLI

  No due date

  •0/2 issues closed
  0% complete2 open0 closed

• Modular flepimop2 skeletoning

  Convert the `flepimop2 skeleton` command to use modular skeletoning classes to allow developers to offer customized project templates.

  No due date

  •0/6 issues closed
  0% complete6 open0 closed

• Add parameter specification

  Successful completion of this milestone should provide users with a complete `parameters` top level key in configuration files that gives them the ability to specify a wide variety of parameters including: - Parameters that are fixed or drawn from a distribution. - Parameters with shape. - Parameters that specify a grid (i.e. scenarios). - A way to match draws from parameters (i.e. match XYZ refers to a specific combinations of parameters).

  No due date

  •2/11 issues closed
  18% complete9 open2 closed

• Add optimization

  This milestone is to track issues related to the creation of an optimization framework within `flepimop2` with the first immediate use case being inference. Successful completion of this milestone will include `OptimizeABC` infrastructure, the addition of `flepimop2 optimize`, and the creation of an external demo package that provides and optimizer that `flepimop2` can use.

  No due date

  •0/7 issues closed
  0% complete7 open0 closed

• Patch CLI

  Completion of this milestone should produce a `flepimop2 patch` CLI action that users can use to merge multiple configuration files together.

  No due date

  •1/9 issues closed
  11% complete8 open1 closed

• Backend & Output Contracts

  Evolve the backend layer and output contracts to support multi-dimensional outputs, structured metadata, output discoverability, selective reads, and backends beyond CSV. All new code must pass ruff check --preview and mypy --strict.

  No due date

  •1/11 issues closed
  9% complete10 open1 closed

• Module infrastructure

  Flesh out the external module loading infrastructure for flepimop2. Specifically external python modules. Successful completion of this milestone should be an GitHub repository containing an external python package that can be loaded by flepimop2

  No due date

  •11/12 issues closed
  91% complete1 open11 closed