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Copy path.gitignore
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204 lines (181 loc) · 4.77 KB
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# ============================================================================
# Python Project .gitignore
# ============================================================================
# ----------------------------------------------------------------------------
# Python Runtime Files
# ----------------------------------------------------------------------------
# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class
# C extensions
*.so
# ----------------------------------------------------------------------------
# Distribution / Packaging
# ----------------------------------------------------------------------------
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
wheels/
pip-wheel-metadata/
share/python-wheels/
*.egg-info/
.installed.cfg
*.egg
MANIFEST
# ----------------------------------------------------------------------------
# Virtual Environments
# ----------------------------------------------------------------------------
.venv/
venv/
ENV/
env/
.virtualenv/
# ----------------------------------------------------------------------------
# PyCharm IDE
# ----------------------------------------------------------------------------
.idea/
*.iml
*.iws
.idea_modules/
# ----------------------------------------------------------------------------
# Testing & Coverage
# ----------------------------------------------------------------------------
.pytest_cache/
.tox/
.nox/
.coverage
.coverage.*
htmlcov/
*.cover
*.py,cover
.hypothesis/
coverage.xml
nosetests.xml
# ----------------------------------------------------------------------------
# Type Checking
# ----------------------------------------------------------------------------
.mypy_cache/
.dmypy.json
dmypy.json
.pyre/
.pytype/
# ----------------------------------------------------------------------------
# Jupyter Notebook
# ----------------------------------------------------------------------------
.ipynb_checkpoints/
*.ipynb_checkpoints
# ----------------------------------------------------------------------------
# Environment & Configuration
# ----------------------------------------------------------------------------
.env
.env.*
!.env.example
*.log
.python-version
.envrc
# ----------------------------------------------------------------------------
# OS-Specific Files
# ----------------------------------------------------------------------------
# macOS
.DS_Store
.AppleDouble
.LSOverride
# Windows
Thumbs.db
Thumbs.db:encryptable
ehthumbs.db
ehthumbs_vista.db
Desktop.ini
# Linux
*~
.directory
.Trash-*
# ----------------------------------------------------------------------------
# Project-Specific Data Files (Based on Current Project)
# ----------------------------------------------------------------------------
# Large data files - should be managed externally or via Git LFS
*.xls
*.xlsx
*.ods
*.pkl
*.npy
# Image/video files - typically too large for git
*.tif
*.tiff
*.gif
*.avi
*.mov
*.mp4
*.jpg
*.jpeg
# Output directories
Results_*/
Xls_Data/
data/
outputs/
Real_wing_tissue_figs_png/
# ============================================================================
# External Tools (Large, Not Source Code)
# ============================================================================
Icy/
epitools*/
cellGraph/
MorphoNet/
wing_contours_circular/
wing_grids/
Wing_disc_videos/
zips/
# ----------------------------------------------------------------------------
# Temporary & Cache Files
# ----------------------------------------------------------------------------
*.swp
*.swo
*.tmp
*.bak
*.orig
.cache/
# ----------------------------------------------------------------------------
# Documentation Build
# ----------------------------------------------------------------------------
docs/_build/
docs/_static/
docs/_templates/
site/
# ----------------------------------------------------------------------------
# Profiling & Debugging
# ----------------------------------------------------------------------------
*.prof
*.lprof
.pydevproject
.ropeproject
# ----------------------------------------------------------------------------
# Database
# ----------------------------------------------------------------------------
*.db
*.sqlite
*.sqlite3
# ----------------------------------------------------------------------------
# Secrets & Credentials
# ----------------------------------------------------------------------------
*.pem
*.key
secrets.json
credentials.json
# ----------------------------------------------------------------------------
# Legacy files
# ----------------------------------------------------------------------------
deprecated
# ============================================================================
# Keep Reference Images (Small PNGs for README)
# ============================================================================
!images/*.png
/deprecated/