outdated documentation and problem downloading database #128
Description
I'm following the documentation on this page: https://github.com/AllenInstitute/aisynphys/blob/current-release/doc/source/interactive_tools.rst
When I issue the command
python tools/synaptic_dynamics.py --db-version=full
I get
KeyError: "Unknown database version; options are: ['synphys_r1.0_2019-08-29_small.sqlite', 'synphys_r1.0_2019-08-29_medium.sqlite', 'synphys_r1.0_2019-08-29_full.sqlite', 'synphys_r1.0_small.sqlite', 'synphys_r1.0_medium.sqlite', 'synphys_r1.0_full.sqlite', 'synphys_r2.0-pre1_small.sqlite', 'synphys_r2.0-pre1_medium.sqlite', 'synphys_r2.0-pre1_full.sqlite', 'synphys_r2.0-pre2_small.sqlite', 'synphys_r2.0-pre2_medium.sqlite', 'synphys_r2.0-pre3_small.sqlite', 'synphys_r2.0-pre3_medium.sqlite', 'synphys_r2.0-pre4_small.sqlite', 'synphys_r2.0-pre4_medium.sqlite']"
Which is fine, I can just switch "full" to "synphys_r2.0-pre1_full.sqlite" for example, but this should be updated in the docs.
However, when I attempt this:
python tools/synaptic_dynamics.py --db-version=synphys_r2.0-pre1_full.sqlite
I get:
Traceback (most recent call last):
File "/Volumes/TOSHIBA EXT/aisynphys/tools/synaptic_dynamics.py", line 5, in <module>
from aisynphys.database import default_db as db
File "/Volumes/TOSHIBA EXT/aisynphys/aisynphys/__init__.py", line 2, in <module>
from . import config
File "/Volumes/TOSHIBA EXT/aisynphys/aisynphys/config.py", line 68, in <module>
sqlite_file = get_db_path(args.db_version)
File "/Volumes/TOSHIBA EXT/aisynphys/aisynphys/synphys_cache.py", line 37, in get_db_path
interactive_download(url, cache_file)
File "/Volumes/TOSHIBA EXT/aisynphys/aisynphys/util.py", line 404, in interactive_download
size = get_url_download_size(url)
File "/Volumes/TOSHIBA EXT/aisynphys/aisynphys/util.py", line 386, in get_url_download_size
file_size = int(urlopen(url).info().get('Content-Length', None))
File "/opt/anaconda3/envs/aisynphys/lib/python3.9/urllib/request.py", line 214, in urlopen
return opener.open(url, data, timeout)
File "/opt/anaconda3/envs/aisynphys/lib/python3.9/urllib/request.py", line 523, in open
response = meth(req, response)
File "/opt/anaconda3/envs/aisynphys/lib/python3.9/urllib/request.py", line 632, in http_response
response = self.parent.error(
File "/opt/anaconda3/envs/aisynphys/lib/python3.9/urllib/request.py", line 561, in error
return self._call_chain(*args)
File "/opt/anaconda3/envs/aisynphys/lib/python3.9/urllib/request.py", line 494, in _call_chain
result = func(*args)
File "/opt/anaconda3/envs/aisynphys/lib/python3.9/urllib/request.py", line 641, in http_error_default
raise HTTPError(req.full_url, code, msg, hdrs, fp)
urllib.error.HTTPError: HTTP Error 403: Forbidden
I should note that I installed the repo in my external hard drive so that may be causing this issue? If so, how do I install the package on my machine and download the full database to another location (such as my external hard drive)?