PLDDT

[123wnk]

Hi AndersJing

How can I use RaptorX for PLDDT

[AndersJing]

Hi, The pLDDT score for each residue is stored in the B-factor column of the PDB file.

[123wnk]

Thanks very much！
And how can I get RMSD via using RaptorX

[AndersJing]

Do you mean calculating the RMSD between the predicted structure and the ground truth structure? If so, you can try the ‘pyrosetta.rosetta.protocols.antibody.cdr_backbone_rmsds’ module in PyRosetta.