SpatialML_Population/.github/workflows/ci.yml at main · AndreWal/SpatialML_Population · GitHub

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name: CI

on:
  push:
    branches: [main, develop]
  pull_request:
    branches: [main]

concurrency:
  group: ci-${{ github.ref }}
  cancel-in-progress: true

jobs:
  test:
    runs-on: ubuntu-latest
    container:
      image: rocker/geospatial:4.5.2

    env:
      RENV_PATHS_CACHE: /renv-cache

    steps:
      - name: Checkout
        uses: actions/checkout@v4

      - name: Cache renv library
        uses: actions/cache@v4
        with:
          path: |
            renv/library
            /renv-cache
          key: renv-${{ runner.os }}-${{ hashFiles('renv.lock') }}
          restore-keys: |
            renv-${{ runner.os }}-

      - name: Install system dependencies
        run: |
          apt-get update -qq
          apt-get install -y --no-install-recommends \
            libgit2-dev \
            libsodium-dev

      - name: Restore renv packages
        run: |
          R -q -e "renv::restore(prompt = FALSE)"

      - name: Run tests
        run: |
          R -q -e "testthat::test_dir('tests/testthat')"

      - name: Run pipeline
        run: |
          R -q -e "targets::tar_make()"

      - name: Validate pipeline outputs
        run: |
          R -q -e "
            targets::tar_load(cv_summary)
            cat('CV Summary:\n')
            print(cv_summary)
            stopifnot(nrow(cv_summary) > 0)
            cat('\nPipeline validation passed.\n')
          "