diff --git a/data/Stock-Flow Output Options.xlsx b/data/Stock-Flow Output Options.xlsx new file mode 100644 index 0000000..0ab30ec Binary files /dev/null and b/data/Stock-Flow Output Options.xlsx differ diff --git a/docs/assets/images/screencap-2_1.png b/docs/assets/images/screencap-2_1.png new file mode 100644 index 0000000..40d9cb7 Binary files /dev/null and b/docs/assets/images/screencap-2_1.png differ diff --git a/docs/assets/images/screencap-4_3.png b/docs/assets/images/screencap-4_3.png index 2f6a3a2..982927b 100644 Binary files a/docs/assets/images/screencap-4_3.png and b/docs/assets/images/screencap-4_3.png differ diff --git a/docs/assets/images/screencap-4_5.png b/docs/assets/images/screencap-4_5.png index c7c87f0..15ae158 100644 Binary files a/docs/assets/images/screencap-4_5.png and b/docs/assets/images/screencap-4_5.png differ diff --git a/docs/assets/images/screencap-4_6.png b/docs/assets/images/screencap-4_6.png index a102c73..e1bbda0 100644 Binary files a/docs/assets/images/screencap-4_6.png and b/docs/assets/images/screencap-4_6.png differ diff --git a/docs/getting_started.md b/docs/getting_started.md index a6538c6..632eda8 100644 --- a/docs/getting_started.md +++ b/docs/getting_started.md @@ -29,7 +29,7 @@ If you do not have **Miniforge** installed on your computer, a dialog box will o ## **Step 2: Create a new LUCAS Builder Library** Having installed the **LUCAS Builder** package, you are now ready to create your first SyncroSim Library. A *Library* is a file (with extension *.ssim*) that contains all of your model inputs and outputs. The format of each library is specific to the Package for which it was initially created. You can opt to create an empty library or download the **lucasbuilder** template library. In this tutorial, we will be using the the **LUCAS Builder - CONUS** template library.
- +
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@@ -124,7 +124,7 @@ If the run is successful, you will see a *Status* of **Done** in the *Run Monito Repeat the process with the **Run Spin-up** scenario. Notice that the outputs from the **Calculate Flow Rates** scenario serve as inputs for the spin-up runs. In turn, the results from the **Run Spin-up** scenario are used as inputs for the **Single Cell - No Disturbance** scenario. Looking at the *Pipeline* of each scenario, you can notice the sequence of modeling stages. -> **Warning Note:** Running these scenarios will take approximatelly 17.4 GB of disk space. +> **Warning Note:** Running these scenarios will take approximatelly 3.5 GB of disk space. Once the **Run Setup** scenarios have completed successfully, the **Run Forecast** scenarios can be run. diff --git a/docs/index.md b/docs/index.md index 877ef97..07c43e1 100644 --- a/docs/index.md +++ b/docs/index.md @@ -47,10 +47,11 @@ Amanda Schwantes (Author, maintainer)
-Bronwyn Rayfield (Author) -
Benjamin Sleeter (Author)
Schuyler Pearman-Gillman (Author)
+Diego Bilski (Author) +
Colin Daniel (Author) + diff --git a/scripts/CreateTemplateLibraryMerch.R b/scripts/CreateTemplateLibraryMerch.R index 07c509d..e650545 100644 --- a/scripts/CreateTemplateLibraryMerch.R +++ b/scripts/CreateTemplateLibraryMerch.R @@ -55,8 +55,8 @@ saveDatasheet(myProject, mySheet, sheetName) sheetName <- "stsim_TransitionType" mySheet <- datasheet(myProject, name=sheetName, optional=T, empty = T) -mySheetFull <- read.csv(paste0(definitionsPath,"Transition Type.csv")) %>% - rename(Id = ID) +mySheetFull <- read.csv(paste0(definitionsPath,"Transition Type.csv")) +names(mySheetFull) <- gsub("ID","Id",names(mySheetFull)) saveDatasheet(myProject, mySheetFull, sheetName) sheetName <- "stsim_TransitionGroup" @@ -268,10 +268,9 @@ saveDatasheet(myScenario, mySheetFull, sheetName) ## Stock flow output options myScenarioName <- "Stock Flow Output Options" myScenario <- scenario(myProject, scenario = myScenarioName, folder = folderId(folder1)) - sheetName <- "stsim_OutputOptionsStockFlow" mySheet <- datasheet(myScenario, name=sheetName, optional=T, empty = T) -mySheetFull <- read_xlsx(path = paste0(dirname(getwd()), "/Data/SF Output Options - Spatial.xlsx"), sheet = "SF Output Options") %>% +mySheetFull <- read_xlsx(path = paste0(dirname(getwd()), "/data/Stock-Flow Output Options.xlsx"), sheet = "Stock-Flow Output") %>% data.frame() # names(mySheetFull) <- names(mySheet) saveDatasheet(myScenario, mySheetFull, sheetName) @@ -446,7 +445,7 @@ saveDatasheet(myProject, myData, sheetName) ## Project Definitions ---- [Needed for Flow-pathways/spin-up Transformers] -maxAge <- 600 +maxAge <- 300 initialStandAge <- 0 standArea <- 1