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Description
When I ran ~/anaconda3/envs/crispr_identify_env/bin/python CRISPRidentify.py --file TestInputMultiline/MultilineFasta.fasta, I got this error
Executing file 1 out of 2 (gi-56475432-ref-NC_006513-.fa)
- Run initial array detection
- Refine detected arrays
- Evaluate candidates
Traceback (most recent call last):
File "CRISPRidentify.py", line 306, in
main()
File "CRISPRidentify.py", line 290, in main
run_over_folder_of_files(folder_multifasta, folder_result, pickle_folder, json_folder)
File "CRISPRidentify.py", line 251, in run_over_folder_of_files
absolute_directory_path=script_absolute_path)
File "/data/home/zhangxiang/gitFolder/CRISPRidentify/components/pipeline.py", line 32, in init
self._run_evaluation()
File "/data/home/zhangxiang/gitFolder/CRISPRidentify/components/pipeline.py", line 62, in _run_evaluation
flag_dev_mode=self.flag_dev_mode)
File "/data/home/zhangxiang/gitFolder/CRISPRidentify/components/module_evaluation.py", line 27, in init
self._extract_features_and_evaluate()
File "/data/home/zhangxiang/gitFolder/CRISPRidentify/components/module_evaluation.py", line 68, in _extract_features_and_evaluate
mfe = mfe_results[key][index]
KeyError: (53873, 54128)
I have create the conda env with mamba env create -f environment.yml.