Issue with --no-fil-flat

[lucasinchausti]

Hello,

I'm trying clust but it seems I can't get de --no-fil-flat option for avoid gene filtering during pre-processing steps.

This is my line of code:
$ clust input_file.txt --no-fil-flat -n0 -t 2 -cs 50 -o clust_7

Note: my input file is already normalized and consists of 10338 genes

And this is the output:
/===========================================================================
| Clust |
| (Optimised consensus clustering of multiple heterogenous datasets) |
| Python package version 1.17.0 (2022) Basel Abu-Jamous |
+---------------------------------------------------------------------------+
| Analysis started at: Thursday 27 April 2023 (19:09:25) |
| 1. Reading dataset(s) |
| 2. Data pre-processing |
| 3. Seed clusters production (the Bi-CoPaM method) |
| 10% |
| 20% |
| 30% |
| 40% |
| 50% |
| 60% |
| 70% |
| 80% |
| 90% |
| 100% |
| 4. Cluster evaluation and selection (the M-N scatter plots technique) |
| 10% |
| 20% |
| 30% |
| 40% |
| 50% |
| 60% |
| 70% |
| 80% |
| 90% |
| 100% |
| 5. Cluster optimisation and completion |
| 6. Saving results in |
| clust_7 |
+---------------------------------------------------------------------------+
| Analysis finished at: Thursday 27 April 2023 (19:14:08) |
| Total time consumed: 0 hours, 4 minutes, and 42 seconds |
| |
===========================================================================/

/===========================================================================
| RESULTS SUMMARY |
+---------------------------------------------------------------------------+
| Clust received 1 dataset with 10338 unique genes. After filtering, 10338 |
| genes made it to the clustering step. Clust generated 3 clusters of |
| genes, which in total include 3463 genes. The smallest cluster includes |
| 357 genes, the largest cluster includes 2575 genes, and the average |
| cluster size is 1154 genes. |
+---------------------------------------------------------------------------+

Thanks!

Lucas