txdb/.github/workflows/run-tests.yml at master · BiocPy/txdb · GitHub

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name: Test the library

on:
  push:
    branches:
      - master # for legacy repos
      - main
  pull_request:
    branches:
      - master # for legacy repos
      - main
  workflow_dispatch: # Allow manually triggering the workflow
  schedule:
    # Run roughly every 15 days at 00:00 UTC
    # (useful to check if updates on dependencies break the package)
    - cron: "0 0 1,16 * *"

permissions:
  contents: read

concurrency:
  group: >-
    ${{ github.workflow }}-${{ github.ref_type }}-
    ${{ github.event.pull_request.number || github.sha }}
  cancel-in-progress: true

jobs:
  test:
    strategy:
      matrix:
        python: ["3.10", "3.11", "3.12", "3.13", "3.14"]
        platform:
          - ubuntu-latest
          - macos-latest
          # - windows-latest
    runs-on: ${{ matrix.platform }}
    name: Python ${{ matrix.python }}, ${{ matrix.platform }}
    steps:
      - uses: actions/checkout@v4

      - uses: actions/setup-python@v5
        id: setup-python
        with:
          python-version: ${{ matrix.python }}

      - name: Install dependencies
        run: |
          python -m pip install --upgrade pip
          pip install tox coverage

      - name: Run tests
        run: >-
          pipx run --python '${{ steps.setup-python.outputs.python-path }}'
          tox
          -- -rFEx --durations 10 --color yes --cov --cov-branch --cov-report=xml  # pytest args

      - name: Check for codecov token availability
        id: codecov-check
        shell: bash
        run: |
          if [ ${{ secrets.CODECOV_TOKEN }} != '' ]; then
            echo "codecov=true" >> $GITHUB_OUTPUT;
          else
            echo "codecov=false" >> $GITHUB_OUTPUT;
          fi

      - name: Upload coverage reports to Codecov with GitHub Action
        uses: codecov/codecov-action@v5
        if: ${{ steps.codecov-check.outputs.codecov == 'true' }}
        env:
          CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
          slug: ${{ github.repository }}
          flags: ${{ matrix.platform }} - py${{ matrix.python }}