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This repository was archived by the owner on Dec 11, 2023. It is now read-only.
This repository was archived by the owner on Dec 11, 2023. It is now read-only.

error: command 'x86_64-linux-gnu-gcc' failed with exit status 1 #409

@Ru-Zheng

Description

@Ru-Zheng

python3 setup.py build_ext --inplace
SSE2 detected
AVX2 detected
running build_ext
skipping 'bcolz/carray_ext.c' Cython extension (up-to-date)
building 'bcolz.carray_ext' extension
creating build
creating build/temp.linux-x86_64-3.8
creating build/temp.linux-x86_64-3.8/bcolz
creating build/temp.linux-x86_64-3.8/c-blosc
creating build/temp.linux-x86_64-3.8/c-blosc/blosc
creating build/temp.linux-x86_64-3.8/c-blosc/internal-complibs
creating build/temp.linux-x86_64-3.8/c-blosc/internal-complibs/lz4-1.8.1.2
creating build/temp.linux-x86_64-3.8/c-blosc/internal-complibs/snappy-1.1.1
creating build/temp.linux-x86_64-3.8/c-blosc/internal-complibs/zlib-1.2.8
creating build/temp.linux-x86_64-3.8/c-blosc/internal-complibs/zstd-1.3.4
creating build/temp.linux-x86_64-3.8/c-blosc/internal-complibs/zstd-1.3.4/decompress
creating build/temp.linux-x86_64-3.8/c-blosc/internal-complibs/zstd-1.3.4/deprecated
creating build/temp.linux-x86_64-3.8/c-blosc/internal-complibs/zstd-1.3.4/dictBuilder
creating build/temp.linux-x86_64-3.8/c-blosc/internal-complibs/zstd-1.3.4/legacy
creating build/temp.linux-x86_64-3.8/c-blosc/internal-complibs/zstd-1.3.4/compress
creating build/temp.linux-x86_64-3.8/c-blosc/internal-complibs/zstd-1.3.4/common
x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/common -I/usr/local/lib/python3.8/dist-packages/numpy/core/include -I/usr/include/python3.8 -c bcolz/carray_ext.c -o build/temp.linux-x86_64-3.8/bcolz/carray_ext.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
In file included from /usr/local/lib/python3.8/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1832,
from /usr/local/lib/python3.8/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/local/lib/python3.8/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from bcolz/carray_ext.c:525:
/usr/local/lib/python3.8/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with "
| ^~~~~~~
bcolz/carray_ext.c: In function ‘PyInit_carray_ext’:
bcolz/carray_ext.c:45964:3: warning: ‘tp_print’ is deprecated [-Wdeprecated-declarations]
45964 | __pyx_type_5bcolz_10carray_ext_chunk.tp_print = 0;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/python3.8/object.h:746,
from /usr/include/python3.8/pytime.h:6,
from /usr/include/python3.8/Python.h:85,
from bcolz/carray_ext.c:4:
/usr/include/python3.8/cpython/object.h:260:30: note: declared here
260 | Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
| ^~~~~~~~
bcolz/carray_ext.c:46014:3: warning: ‘tp_print’ is deprecated [-Wdeprecated-declarations]
46014 | __pyx_type_5bcolz_10carray_ext_chunks.tp_print = 0;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/python3.8/object.h:746,
from /usr/include/python3.8/pytime.h:6,
from /usr/include/python3.8/Python.h:85,
from bcolz/carray_ext.c:4:
/usr/include/python3.8/cpython/object.h:260:30: note: declared here
260 | Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
| ^~~~~~~~
bcolz/carray_ext.c:46026:3: warning: ‘tp_print’ is deprecated [-Wdeprecated-declarations]
46026 | __pyx_type_5bcolz_10carray_ext_carray.tp_print = 0;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/python3.8/object.h:746,
from /usr/include/python3.8/pytime.h:6,
from /usr/include/python3.8/Python.h:85,
from bcolz/carray_ext.c:4:
/usr/include/python3.8/cpython/object.h:260:30: note: declared here
260 | Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int);
| ^~~~~~~~
x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/common -I/usr/local/lib/python3.8/dist-packages/numpy/core/include -I/usr/include/python3.8 -c c-blosc/blosc/bitshuffle-generic.c -o build/temp.linux-x86_64-3.8/c-blosc/blosc/bitshuffle-generic.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/common -I/usr/local/lib/python3.8/dist-packages/numpy/core/include -I/usr/include/python3.8 -c c-blosc/blosc/fastcopy.c -o build/temp.linux-x86_64-3.8/c-blosc/blosc/fastcopy.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/common -I/usr/local/lib/python3.8/dist-packages/numpy/core/include -I/usr/include/python3.8 -c c-blosc/blosc/shuffle.c -o build/temp.linux-x86_64-3.8/c-blosc/blosc/shuffle.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
c-blosc/blosc/shuffle.c:170:1: error: conflicting types for ‘_xgetbv’
170 | _xgetbv(uint32_t xcr) {
| ^~~~~~~
In file included from /usr/lib/gcc/x86_64-linux-gnu/9/include/immintrin.h:43,
from c-blosc/blosc/blosc-common.h:77,
from c-blosc/blosc/shuffle.h:18,
from c-blosc/blosc/shuffle.c:10:
/usr/lib/gcc/x86_64-linux-gnu/9/include/xsaveintrin.h:60:1: note: previous definition of ‘_xgetbv’ was here
60 | _xgetbv (unsigned int __A)
| ^~~~~~~
In file included from c-blosc/blosc/shuffle.c:11:
c-blosc/blosc/shuffle-generic.h:61:13: warning: ‘unshuffle_generic_inline’ defined but not used [-Wunused-function]
61 | static void unshuffle_generic_inline(const size_t type_size,
| ^~~~~~~~~~~~~~~~~~~~~~~~
c-blosc/blosc/shuffle-generic.h:32:13: warning: ‘shuffle_generic_inline’ defined but not used [-Wunused-function]
32 | static void shuffle_generic_inline(const size_t type_size,
| ^~~~~~~~~~~~~~~~~~~~~~
error: command 'x86_64-linux-gnu-gcc' failed with exit status 1

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