From 20c880775233156163f80ddecb99a8a8886c3378 Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
<66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 20 Apr 2026 19:29:16 +0000
Subject: [PATCH 1/3] [pre-commit.ci] pre-commit autoupdate
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.15.10 → v0.15.11](https://github.com/astral-sh/ruff-pre-commit/compare/v0.15.10...v0.15.11)
---
.pre-commit-config.yaml | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 5deaa96..d6c3502 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -39,7 +39,7 @@ repos:
- prettier@3.4.0
# Python formatting
- repo: https://github.com/astral-sh/ruff-pre-commit
- rev: v0.15.10
+ rev: v0.15.11
hooks:
- id: ruff-check
args: [--fix]
From aca1b40a58b64e99b01b0140df623c7b4ea822b1 Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
<66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 20 Apr 2026 19:29:35 +0000
Subject: [PATCH 2/3] [pre-commit.ci] auto fixes from pre-commit.com hooks
for more information, see https://pre-commit.ci
---
profile/README.md | 96 +++++++++++++++-------------
profile/activity_data/CCBR/README.md | 83 ++++++++++++------------
2 files changed, 92 insertions(+), 87 deletions(-)
diff --git a/profile/README.md b/profile/README.md
index ee6d636..ac5bf1b 100644
--- a/profile/README.md
+++ b/profile/README.md
@@ -1,45 +1,48 @@
[
](https://bioinformatics.ccr.cancer.gov/ccbr/)
+
## Table of Contents
- - [NEW Releases](#new-releases)
- - [TOP contributors](#top-contributors)
- - [About Us](#about-us)
- - [Our model](#our-model)
- - [Pipelines](#pipelines)
- - [Tools](#tools)
- - [`ccbrpipeliner` module release history on BIOWULF](#`ccbrpipeliner`-module-release-history-on-biowulf)
- - [Latest Releases of pipelines/tools:](#latest-releases-of-pipelines/tools:)
- - [Days since last activity](#days-since-last-activity)
- - [Citation](#citation)
-
-## NEW Releases
-
-| Repo Name | Release Name | Release Date | Open Issues |
-|:-----------------------------------------------|:----------------------------------------------------------------|:---------------|--------------:|
-| [CHAMPAGNE](https://github.com/CCBR/CHAMPAGNE) | [v0.6.0](https://github.com/CCBR/CHAMPAGNE/releases/tag/v0.6.0) | 2026-04-17 | 30 |
-| [RENEE](https://github.com/CCBR/RENEE) | [v2.7.5](https://github.com/CCBR/RENEE/releases/tag/v2.7.5) | 2026-04-06 | 22 |
-| [Tools](https://github.com/CCBR/Tools) | [v0.5.2](https://github.com/CCBR/Tools/releases/tag/v0.5.2) | 2026-03-24 | 9 |
-| [actions](https://github.com/CCBR/actions) | [v0.5.2](https://github.com/CCBR/actions/releases/tag/v0.5.2) | 2026-03-20 | 13 |
-| [CARLISLE](https://github.com/CCBR/CARLISLE) | [v2.7.5](https://github.com/CCBR/CARLISLE/releases/tag/v2.7.5) | 2026-03-09 | 17 |
-| [HowTos](https://github.com/CCBR/HowTos) | [v1.1.0](https://github.com/CCBR/HowTos/releases/tag/v1.1.0) | 2026-02-23 | 15 |
-| [parkit](https://github.com/CCBR/parkit) | [v3.0.1](https://github.com/CCBR/parkit/releases/tag/v3.0.1) | 2026-02-19 | 3 |
-| [LOGAN](https://github.com/CCBR/LOGAN) | [v0.3.3](https://github.com/CCBR/LOGAN/releases/tag/v0.3.3) | 2026-02-12 | 21 |
-| [MOSuite](https://github.com/CCBR/MOSuite) | [v0.3.0](https://github.com/CCBR/MOSuite/releases/tag/v0.3.0) | 2026-02-06 | 30 |
-| [XAVIER](https://github.com/CCBR/XAVIER) | [v3.2.2](https://github.com/CCBR/XAVIER/releases/tag/v3.2.2) | 2026-01-29 | 11 |
-
-## TOP contributors
-
-| User | Total Commits | Commits in Last Month | Commits in Last 6 Months |
-|:------------------------------------------------------|----------------:|------------------------:|---------------------------:|
-| [kelly-sovacool](https://github.com/kelly-sovacool) | 5754 | 93 | 689 |
-| [kopardev](https://github.com/kopardev) | 2785 | 0 | 107 |
-| [finneyr](https://github.com/finneyr) | 323 | 0 | 0 |
-| [kvaldez](https://github.com/kvaldez) | 222 | 0 | 0 |
-| [escauley](https://github.com/escauley) | 192 | 0 | 55 |
-| [samarth8392](https://github.com/samarth8392) | 161 | 1 | 19 |
-| [wong-nw](https://github.com/wong-nw) | 112 | 1 | 1 |
-| [maggiecam](https://github.com/maggiecam) | 46 | 0 | 0 |
-| [pajailwala](https://github.com/pajailwala) | 44 | 21 | 21 |
-| [wilfriedguiblet](https://github.com/wilfriedguiblet) | 14 | 0 | 1 |
+
+- [NEW Releases](#new-releases)
+- [TOP contributors](#top-contributors)
+- [About Us](#about-us)
+- [Our model](#our-model)
+- [Pipelines](#pipelines)
+- [Tools](#tools)
+- [`ccbrpipeliner` module release history on BIOWULF](#`ccbrpipeliner`-module-release-history-on-biowulf)
+- [Latest Releases of pipelines/tools:](#latest-releases-of-pipelines/tools:)
+- [Days since last activity](#days-since-last-activity)
+- [Citation](#citation)
+
+## NEW Releases
+
+| Repo Name | Release Name | Release Date | Open Issues |
+| :--------------------------------------------- | :-------------------------------------------------------------- | :----------- | ----------: |
+| [CHAMPAGNE](https://github.com/CCBR/CHAMPAGNE) | [v0.6.0](https://github.com/CCBR/CHAMPAGNE/releases/tag/v0.6.0) | 2026-04-17 | 30 |
+| [RENEE](https://github.com/CCBR/RENEE) | [v2.7.5](https://github.com/CCBR/RENEE/releases/tag/v2.7.5) | 2026-04-06 | 22 |
+| [Tools](https://github.com/CCBR/Tools) | [v0.5.2](https://github.com/CCBR/Tools/releases/tag/v0.5.2) | 2026-03-24 | 9 |
+| [actions](https://github.com/CCBR/actions) | [v0.5.2](https://github.com/CCBR/actions/releases/tag/v0.5.2) | 2026-03-20 | 13 |
+| [CARLISLE](https://github.com/CCBR/CARLISLE) | [v2.7.5](https://github.com/CCBR/CARLISLE/releases/tag/v2.7.5) | 2026-03-09 | 17 |
+| [HowTos](https://github.com/CCBR/HowTos) | [v1.1.0](https://github.com/CCBR/HowTos/releases/tag/v1.1.0) | 2026-02-23 | 15 |
+| [parkit](https://github.com/CCBR/parkit) | [v3.0.1](https://github.com/CCBR/parkit/releases/tag/v3.0.1) | 2026-02-19 | 3 |
+| [LOGAN](https://github.com/CCBR/LOGAN) | [v0.3.3](https://github.com/CCBR/LOGAN/releases/tag/v0.3.3) | 2026-02-12 | 21 |
+| [MOSuite](https://github.com/CCBR/MOSuite) | [v0.3.0](https://github.com/CCBR/MOSuite/releases/tag/v0.3.0) | 2026-02-06 | 30 |
+| [XAVIER](https://github.com/CCBR/XAVIER) | [v3.2.2](https://github.com/CCBR/XAVIER/releases/tag/v3.2.2) | 2026-01-29 | 11 |
+
+## TOP contributors
+
+| User | Total Commits | Commits in Last Month | Commits in Last 6 Months |
+| :---------------------------------------------------- | ------------: | --------------------: | -----------------------: |
+| [kelly-sovacool](https://github.com/kelly-sovacool) | 5754 | 93 | 689 |
+| [kopardev](https://github.com/kopardev) | 2785 | 0 | 107 |
+| [finneyr](https://github.com/finneyr) | 323 | 0 | 0 |
+| [kvaldez](https://github.com/kvaldez) | 222 | 0 | 0 |
+| [escauley](https://github.com/escauley) | 192 | 0 | 55 |
+| [samarth8392](https://github.com/samarth8392) | 161 | 1 | 19 |
+| [wong-nw](https://github.com/wong-nw) | 112 | 1 | 1 |
+| [maggiecam](https://github.com/maggiecam) | 46 | 0 | 0 |
+| [pajailwala](https://github.com/pajailwala) | 44 | 21 | 21 |
+| [wilfriedguiblet](https://github.com/wilfriedguiblet) | 14 | 0 | 1 |
+
## About Us
- 👋 Hi, we're the [**@CCBR**](https://bioinformatics.ccr.cancer.gov/ccbr/), a group of bioinformatics analysts and engineers
@@ -52,6 +55,7 @@
Back to Top
+
## Our model
[
](https://bioinformatics.ccr.cancer.gov/ccbr/)
@@ -67,6 +71,7 @@ The CCBR comprises of the core team and the embedded team. These teams serve dif
- The embedded team members are bioinformaticians who are integrated within specific research groups or labs. Their role is to provide more focused, day-to-day bioinformatics support tailored to the specific needs of the research group they are embedded in. This allows for a deeper collaboration and a more nuanced understanding of the ongoing research projects within that group.
> For details, please visit [CCBR's official website](https://bioinformatics.ccr.cancer.gov/ccbr/).
+
Back to Top
@@ -122,6 +127,7 @@ CCBR offers end-to-end analysis pipelines for NGS data analysis.
**11** SPENCER=_SPatial seqeENCing Resource_.
For any other datatype or pipeline, please [email :mailbox:](mailto:ccbr_pipeliner@mail.nih.gov) us directly to get the conversation started!
+
Back to Top
@@ -138,6 +144,7 @@ In additions to end-to-end analysis pipelines, the CCBR dev team also builds too
Back to Top
+
## `ccbrpipeliner` module release history on BIOWULF
`module load ccbrpipeliner` loads default release of ccbrpipeliner. Each release comprises of a unique combination of the version numbers of the different pipelines offered as part of the ccbrpipeliner suite.
@@ -160,6 +167,7 @@ In additions to end-to-end analysis pipelines, the CCBR dev team also builds too
> # = GUI available
> `module load ccbrpipeliner` is also available on HELIX. It only loads the **tools** and not the **pipelines** as HELIX does not have a job scheduler
+
Back to Top
@@ -206,12 +214,9 @@ In additions to end-to-end analysis pipelines, the CCBR dev team also builds too
Back to Top
-## Days since last activity
-
-
-
- - [CCBR](activity_data/CCBR/README.md)
+## Days since last activity
+- [CCBR](activity_data/CCBR/README.md)
@@ -221,6 +226,7 @@ In additions to end-to-end analysis pipelines, the CCBR dev team also builds too
## Citation
Most of our end-to-end pipelines which have been used in published research work have been made available to the entire bioinformatics community via a Zenodo DOI. Please feel free to visit our [Zenodo community page](https://zenodo.org/communities/ccbr). And if you use our pipelines, don't forget to cite us!
+
Back to Top
diff --git a/profile/activity_data/CCBR/README.md b/profile/activity_data/CCBR/README.md
index cfa0520..e8daf57 100644
--- a/profile/activity_data/CCBR/README.md
+++ b/profile/activity_data/CCBR/README.md
@@ -1,42 +1,41 @@
-
-| github_handle | member/collaborator | days_inactive |
-|-----------------|----------------------|---------------|
-| [aemmons90](https://github.com/aemmons90) | member | No Activity Found |
-| [bfugaru2025](https://github.com/bfugaru2025) | member | No Activity Found |
-| [bianjh-cloud](https://github.com/bianjh-cloud) | member | 17 |
-| [burnskd](https://github.com/burnskd) | member | No Activity Found |
-| [epehrsson](https://github.com/epehrsson) | member | No Activity Found |
-| [escauley](https://github.com/escauley) | member | 3 |
-| [finneyr](https://github.com/finneyr) | member | No Activity Found |
-| [HidetakaOhnuki-NCI](https://github.com/HidetakaOhnuki-NCI) | member | No Activity Found |
-| [huaitian1129](https://github.com/huaitian1129) | member | No Activity Found |
-| [JWrows2014](https://github.com/JWrows2014) | member | No Activity Found |
-| [kcgfarb](https://github.com/kcgfarb) | member | No Activity Found |
-| [kelly-sovacool](https://github.com/kelly-sovacool) | member | 2 |
-| [kopardev](https://github.com/kopardev) | member | No Activity Found |
-| [kvaldez](https://github.com/kvaldez) | member | 26 |
-| [lobanovav](https://github.com/lobanovav) | member | No Activity Found |
-| [maggiecam](https://github.com/maggiecam) | member | No Activity Found |
-| [McIntoshC](https://github.com/McIntoshC) | member | No Activity Found |
-| [onealka](https://github.com/onealka) | member | No Activity Found |
-| [pajailwala](https://github.com/pajailwala) | member | 3 |
-| [phoman14](https://github.com/phoman14) | member | No Activity Found |
-| [raraslw-nih](https://github.com/raraslw-nih) | member | No Activity Found |
-| [RobSchultz4](https://github.com/RobSchultz4) | member | No Activity Found |
-| [samarth8392](https://github.com/samarth8392) | member | 2 |
-| [shaoli86](https://github.com/shaoli86) | member | No Activity Found |
-| [TJoshMeyer](https://github.com/TJoshMeyer) | member | No Activity Found |
-| [VidhurDS](https://github.com/VidhurDS) | member | No Activity Found |
-| [vinegang](https://github.com/vinegang) | member | No Activity Found |
-| [wilfriedguiblet](https://github.com/wilfriedguiblet) | member | No Activity Found |
-| [wong-nw](https://github.com/wong-nw) | member | 3 |
-| [wuy24](https://github.com/wuy24) | member | No Activity Found |
-| [abombin](https://github.com/abombin) | collaborator | No Activity Found |
-| [dnousome](https://github.com/dnousome) | collaborator | No Activity Found |
-| [e-hutchins](https://github.com/e-hutchins) | collaborator | No Activity Found |
-| [nanobio-jcjones](https://github.com/nanobio-jcjones) | collaborator | No Activity Found |
-| [skchronicles](https://github.com/skchronicles) | collaborator | No Activity Found |
-| [slsevilla](https://github.com/slsevilla) | collaborator | No Activity Found |
-| [stephchid](https://github.com/stephchid) | collaborator | No Activity Found |
-| [syding327](https://github.com/syding327) | collaborator | No Activity Found |
-| [tsnetterfield](https://github.com/tsnetterfield) | collaborator | No Activity Found |
+| github_handle | member/collaborator | days_inactive |
+| ----------------------------------------------------------- | ------------------- | ----------------- |
+| [aemmons90](https://github.com/aemmons90) | member | No Activity Found |
+| [bfugaru2025](https://github.com/bfugaru2025) | member | No Activity Found |
+| [bianjh-cloud](https://github.com/bianjh-cloud) | member | 17 |
+| [burnskd](https://github.com/burnskd) | member | No Activity Found |
+| [epehrsson](https://github.com/epehrsson) | member | No Activity Found |
+| [escauley](https://github.com/escauley) | member | 3 |
+| [finneyr](https://github.com/finneyr) | member | No Activity Found |
+| [HidetakaOhnuki-NCI](https://github.com/HidetakaOhnuki-NCI) | member | No Activity Found |
+| [huaitian1129](https://github.com/huaitian1129) | member | No Activity Found |
+| [JWrows2014](https://github.com/JWrows2014) | member | No Activity Found |
+| [kcgfarb](https://github.com/kcgfarb) | member | No Activity Found |
+| [kelly-sovacool](https://github.com/kelly-sovacool) | member | 2 |
+| [kopardev](https://github.com/kopardev) | member | No Activity Found |
+| [kvaldez](https://github.com/kvaldez) | member | 26 |
+| [lobanovav](https://github.com/lobanovav) | member | No Activity Found |
+| [maggiecam](https://github.com/maggiecam) | member | No Activity Found |
+| [McIntoshC](https://github.com/McIntoshC) | member | No Activity Found |
+| [onealka](https://github.com/onealka) | member | No Activity Found |
+| [pajailwala](https://github.com/pajailwala) | member | 3 |
+| [phoman14](https://github.com/phoman14) | member | No Activity Found |
+| [raraslw-nih](https://github.com/raraslw-nih) | member | No Activity Found |
+| [RobSchultz4](https://github.com/RobSchultz4) | member | No Activity Found |
+| [samarth8392](https://github.com/samarth8392) | member | 2 |
+| [shaoli86](https://github.com/shaoli86) | member | No Activity Found |
+| [TJoshMeyer](https://github.com/TJoshMeyer) | member | No Activity Found |
+| [VidhurDS](https://github.com/VidhurDS) | member | No Activity Found |
+| [vinegang](https://github.com/vinegang) | member | No Activity Found |
+| [wilfriedguiblet](https://github.com/wilfriedguiblet) | member | No Activity Found |
+| [wong-nw](https://github.com/wong-nw) | member | 3 |
+| [wuy24](https://github.com/wuy24) | member | No Activity Found |
+| [abombin](https://github.com/abombin) | collaborator | No Activity Found |
+| [dnousome](https://github.com/dnousome) | collaborator | No Activity Found |
+| [e-hutchins](https://github.com/e-hutchins) | collaborator | No Activity Found |
+| [nanobio-jcjones](https://github.com/nanobio-jcjones) | collaborator | No Activity Found |
+| [skchronicles](https://github.com/skchronicles) | collaborator | No Activity Found |
+| [slsevilla](https://github.com/slsevilla) | collaborator | No Activity Found |
+| [stephchid](https://github.com/stephchid) | collaborator | No Activity Found |
+| [syding327](https://github.com/syding327) | collaborator | No Activity Found |
+| [tsnetterfield](https://github.com/tsnetterfield) | collaborator | No Activity Found |
From ed6648b32e9e0c01e669883130ae980ef2d4448b Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
<66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 27 Apr 2026 19:26:51 +0000
Subject: [PATCH 3/3] [pre-commit.ci] auto fixes from pre-commit.com hooks
for more information, see https://pre-commit.ci
---
profile/README.md | 84 +++++++++++++--------------
profile/activity_data/CCBR/README.md | 85 ++++++++++++++--------------
2 files changed, 85 insertions(+), 84 deletions(-)
diff --git a/profile/README.md b/profile/README.md
index f6b0fa7..c7731c2 100644
--- a/profile/README.md
+++ b/profile/README.md
@@ -1,47 +1,49 @@
[](https://bioinformatics.ccr.cancer.gov/ccbr/)
## Table of Contents
- - [NEW Releases](#new-releases)
- - [TOP contributors](#top-contributors)
- - [About Us](#about-us)
- - [Our model](#our-model)
- - [Pipelines](#pipelines)
- - [Tools](#tools)
- - [`ccbrpipeliner` module release history on BIOWULF](#`ccbrpipeliner`-module-release-history-on-biowulf)
- - [Latest Releases of pipelines/tools:](#latest-releases-of-pipelines/tools:)
- - [Days since last activity](#days-since-last-activity)
- - [Citation](#citation)
-
-## NEW Releases
-
-| Repo Name | Release Name | Release Date | Open Issues |
-|:-----------------------------------------------|:----------------------------------------------------------------|:---------------|--------------:|
-| [actions](https://github.com/CCBR/actions) | [v0.6.2](https://github.com/CCBR/actions/releases/tag/v0.6.2) | 2026-04-23 | 11 |
-| [SINCLAIR](https://github.com/CCBR/SINCLAIR) | [v0.3.6](https://github.com/CCBR/SINCLAIR/releases/tag/v0.3.6) | 2026-04-22 | 30 |
-| [CHAMPAGNE](https://github.com/CCBR/CHAMPAGNE) | [v0.6.0](https://github.com/CCBR/CHAMPAGNE/releases/tag/v0.6.0) | 2026-04-17 | 30 |
-| [RENEE](https://github.com/CCBR/RENEE) | [v2.7.5](https://github.com/CCBR/RENEE/releases/tag/v2.7.5) | 2026-04-06 | 23 |
-| [Tools](https://github.com/CCBR/Tools) | [v0.5.2](https://github.com/CCBR/Tools/releases/tag/v0.5.2) | 2026-03-24 | 8 |
-| [CARLISLE](https://github.com/CCBR/CARLISLE) | [v2.7.5](https://github.com/CCBR/CARLISLE/releases/tag/v2.7.5) | 2026-03-09 | 21 |
-| [HowTos](https://github.com/CCBR/HowTos) | [v1.1.0](https://github.com/CCBR/HowTos/releases/tag/v1.1.0) | 2026-02-23 | 15 |
-| [parkit](https://github.com/CCBR/parkit) | [v3.0.1](https://github.com/CCBR/parkit/releases/tag/v3.0.1) | 2026-02-19 | 3 |
-| [LOGAN](https://github.com/CCBR/LOGAN) | [v0.3.3](https://github.com/CCBR/LOGAN/releases/tag/v0.3.3) | 2026-02-12 | 21 |
-| [MOSuite](https://github.com/CCBR/MOSuite) | [v0.3.0](https://github.com/CCBR/MOSuite/releases/tag/v0.3.0) | 2026-02-06 | 30 |
-| [XAVIER](https://github.com/CCBR/XAVIER) | [v3.2.2](https://github.com/CCBR/XAVIER/releases/tag/v3.2.2) | 2026-01-29 | 11 |
-
-## TOP contributors
-
-| User | Total Commits | Commits in Last Month | Commits in Last 6 Months |
-|:----------------------------------------------------|----------------:|------------------------:|---------------------------:|
-| [kelly-sovacool](https://github.com/kelly-sovacool) | 5791 | 101 | 705 |
-| [kopardev](https://github.com/kopardev) | 2790 | 3 | 112 |
-| [finneyr](https://github.com/finneyr) | 323 | 0 | 0 |
-| [kvaldez](https://github.com/kvaldez) | 222 | 0 | 0 |
-| [escauley](https://github.com/escauley) | 192 | 0 | 54 |
-| [samarth8392](https://github.com/samarth8392) | 161 | 0 | 19 |
-| [wong-nw](https://github.com/wong-nw) | 112 | 1 | 1 |
-| [pajailwala](https://github.com/pajailwala) | 47 | 24 | 24 |
-| [maggiecam](https://github.com/maggiecam) | 46 | 0 | 0 |
-| [phoman14](https://github.com/phoman14) | 19 | 11 | 11 |
+
+- [NEW Releases](#new-releases)
+- [TOP contributors](#top-contributors)
+- [About Us](#about-us)
+- [Our model](#our-model)
+- [Pipelines](#pipelines)
+- [Tools](#tools)
+- [`ccbrpipeliner` module release history on BIOWULF](#`ccbrpipeliner`-module-release-history-on-biowulf)
+- [Latest Releases of pipelines/tools:](#latest-releases-of-pipelines/tools:)
+- [Days since last activity](#days-since-last-activity)
+- [Citation](#citation)
+
+## NEW Releases
+
+| Repo Name | Release Name | Release Date | Open Issues |
+| :--------------------------------------------- | :-------------------------------------------------------------- | :----------- | ----------: |
+| [actions](https://github.com/CCBR/actions) | [v0.6.2](https://github.com/CCBR/actions/releases/tag/v0.6.2) | 2026-04-23 | 11 |
+| [SINCLAIR](https://github.com/CCBR/SINCLAIR) | [v0.3.6](https://github.com/CCBR/SINCLAIR/releases/tag/v0.3.6) | 2026-04-22 | 30 |
+| [CHAMPAGNE](https://github.com/CCBR/CHAMPAGNE) | [v0.6.0](https://github.com/CCBR/CHAMPAGNE/releases/tag/v0.6.0) | 2026-04-17 | 30 |
+| [RENEE](https://github.com/CCBR/RENEE) | [v2.7.5](https://github.com/CCBR/RENEE/releases/tag/v2.7.5) | 2026-04-06 | 23 |
+| [Tools](https://github.com/CCBR/Tools) | [v0.5.2](https://github.com/CCBR/Tools/releases/tag/v0.5.2) | 2026-03-24 | 8 |
+| [CARLISLE](https://github.com/CCBR/CARLISLE) | [v2.7.5](https://github.com/CCBR/CARLISLE/releases/tag/v2.7.5) | 2026-03-09 | 21 |
+| [HowTos](https://github.com/CCBR/HowTos) | [v1.1.0](https://github.com/CCBR/HowTos/releases/tag/v1.1.0) | 2026-02-23 | 15 |
+| [parkit](https://github.com/CCBR/parkit) | [v3.0.1](https://github.com/CCBR/parkit/releases/tag/v3.0.1) | 2026-02-19 | 3 |
+| [LOGAN](https://github.com/CCBR/LOGAN) | [v0.3.3](https://github.com/CCBR/LOGAN/releases/tag/v0.3.3) | 2026-02-12 | 21 |
+| [MOSuite](https://github.com/CCBR/MOSuite) | [v0.3.0](https://github.com/CCBR/MOSuite/releases/tag/v0.3.0) | 2026-02-06 | 30 |
+| [XAVIER](https://github.com/CCBR/XAVIER) | [v3.2.2](https://github.com/CCBR/XAVIER/releases/tag/v3.2.2) | 2026-01-29 | 11 |
+
+## TOP contributors
+
+| User | Total Commits | Commits in Last Month | Commits in Last 6 Months |
+| :-------------------------------------------------- | ------------: | --------------------: | -----------------------: |
+| [kelly-sovacool](https://github.com/kelly-sovacool) | 5791 | 101 | 705 |
+| [kopardev](https://github.com/kopardev) | 2790 | 3 | 112 |
+| [finneyr](https://github.com/finneyr) | 323 | 0 | 0 |
+| [kvaldez](https://github.com/kvaldez) | 222 | 0 | 0 |
+| [escauley](https://github.com/escauley) | 192 | 0 | 54 |
+| [samarth8392](https://github.com/samarth8392) | 161 | 0 | 19 |
+| [wong-nw](https://github.com/wong-nw) | 112 | 1 | 1 |
+| [pajailwala](https://github.com/pajailwala) | 47 | 24 | 24 |
+| [maggiecam](https://github.com/maggiecam) | 46 | 0 | 0 |
+| [phoman14](https://github.com/phoman14) | 19 | 11 | 11 |
+
## About Us
- 👋 Hi, we're the [**@CCBR**](https://bioinformatics.ccr.cancer.gov/ccbr/), a group of bioinformatics analysts and engineers
diff --git a/profile/activity_data/CCBR/README.md b/profile/activity_data/CCBR/README.md
index ca79431..2ea917e 100644
--- a/profile/activity_data/CCBR/README.md
+++ b/profile/activity_data/CCBR/README.md
@@ -1,43 +1,42 @@
-
-| github_handle | member/collaborator | days_inactive |
-|-----------------|----------------------|---------------|
-| [aemmons90](https://github.com/aemmons90) | member | No Activity Found |
-| [bfugaru2025](https://github.com/bfugaru2025) | member | No Activity Found |
-| [bianjh-cloud](https://github.com/bianjh-cloud) | member | 24 |
-| [burnskd](https://github.com/burnskd) | member | No Activity Found |
-| [epehrsson](https://github.com/epehrsson) | member | No Activity Found |
-| [escauley](https://github.com/escauley) | member | 4 |
-| [finneyr](https://github.com/finneyr) | member | No Activity Found |
-| [HidetakaOhnuki-NCI](https://github.com/HidetakaOhnuki-NCI) | member | No Activity Found |
-| [huaitian1129](https://github.com/huaitian1129) | member | No Activity Found |
-| [JWrows2014](https://github.com/JWrows2014) | member | No Activity Found |
-| [kcgfarb](https://github.com/kcgfarb) | member | No Activity Found |
-| [kelly-sovacool](https://github.com/kelly-sovacool) | member | 2 |
-| [kopardev](https://github.com/kopardev) | member | 3 |
-| [kvaldez](https://github.com/kvaldez) | member | No Activity Found |
-| [lobanovav](https://github.com/lobanovav) | member | No Activity Found |
-| [maggiecam](https://github.com/maggiecam) | member | No Activity Found |
-| [McIntoshC](https://github.com/McIntoshC) | member | No Activity Found |
-| [onealka](https://github.com/onealka) | member | No Activity Found |
-| [pajailwala](https://github.com/pajailwala) | member | 6 |
-| [phoman14](https://github.com/phoman14) | member | 6 |
-| [raraslw-nih](https://github.com/raraslw-nih) | member | No Activity Found |
-| [RobSchultz4](https://github.com/RobSchultz4) | member | No Activity Found |
-| [samarth8392](https://github.com/samarth8392) | member | 5 |
-| [shaoli86](https://github.com/shaoli86) | member | No Activity Found |
-| [TJoshMeyer](https://github.com/TJoshMeyer) | member | No Activity Found |
-| [VidhurDS](https://github.com/VidhurDS) | member | No Activity Found |
-| [vinegang](https://github.com/vinegang) | member | No Activity Found |
-| [wilfriedguiblet](https://github.com/wilfriedguiblet) | member | No Activity Found |
-| [wong-nw](https://github.com/wong-nw) | member | 2 |
-| [wuy24](https://github.com/wuy24) | member | No Activity Found |
-| [abombin](https://github.com/abombin) | collaborator | No Activity Found |
-| [dnousome](https://github.com/dnousome) | collaborator | No Activity Found |
-| [e-hutchins](https://github.com/e-hutchins) | collaborator | No Activity Found |
-| [fangliu117](https://github.com/fangliu117) | collaborator | 6 |
-| [nanobio-jcjones](https://github.com/nanobio-jcjones) | collaborator | No Activity Found |
-| [skchronicles](https://github.com/skchronicles) | collaborator | No Activity Found |
-| [slsevilla](https://github.com/slsevilla) | collaborator | No Activity Found |
-| [stephchid](https://github.com/stephchid) | collaborator | No Activity Found |
-| [syding327](https://github.com/syding327) | collaborator | No Activity Found |
-| [tsnetterfield](https://github.com/tsnetterfield) | collaborator | No Activity Found |
+| github_handle | member/collaborator | days_inactive |
+| ----------------------------------------------------------- | ------------------- | ----------------- |
+| [aemmons90](https://github.com/aemmons90) | member | No Activity Found |
+| [bfugaru2025](https://github.com/bfugaru2025) | member | No Activity Found |
+| [bianjh-cloud](https://github.com/bianjh-cloud) | member | 24 |
+| [burnskd](https://github.com/burnskd) | member | No Activity Found |
+| [epehrsson](https://github.com/epehrsson) | member | No Activity Found |
+| [escauley](https://github.com/escauley) | member | 4 |
+| [finneyr](https://github.com/finneyr) | member | No Activity Found |
+| [HidetakaOhnuki-NCI](https://github.com/HidetakaOhnuki-NCI) | member | No Activity Found |
+| [huaitian1129](https://github.com/huaitian1129) | member | No Activity Found |
+| [JWrows2014](https://github.com/JWrows2014) | member | No Activity Found |
+| [kcgfarb](https://github.com/kcgfarb) | member | No Activity Found |
+| [kelly-sovacool](https://github.com/kelly-sovacool) | member | 2 |
+| [kopardev](https://github.com/kopardev) | member | 3 |
+| [kvaldez](https://github.com/kvaldez) | member | No Activity Found |
+| [lobanovav](https://github.com/lobanovav) | member | No Activity Found |
+| [maggiecam](https://github.com/maggiecam) | member | No Activity Found |
+| [McIntoshC](https://github.com/McIntoshC) | member | No Activity Found |
+| [onealka](https://github.com/onealka) | member | No Activity Found |
+| [pajailwala](https://github.com/pajailwala) | member | 6 |
+| [phoman14](https://github.com/phoman14) | member | 6 |
+| [raraslw-nih](https://github.com/raraslw-nih) | member | No Activity Found |
+| [RobSchultz4](https://github.com/RobSchultz4) | member | No Activity Found |
+| [samarth8392](https://github.com/samarth8392) | member | 5 |
+| [shaoli86](https://github.com/shaoli86) | member | No Activity Found |
+| [TJoshMeyer](https://github.com/TJoshMeyer) | member | No Activity Found |
+| [VidhurDS](https://github.com/VidhurDS) | member | No Activity Found |
+| [vinegang](https://github.com/vinegang) | member | No Activity Found |
+| [wilfriedguiblet](https://github.com/wilfriedguiblet) | member | No Activity Found |
+| [wong-nw](https://github.com/wong-nw) | member | 2 |
+| [wuy24](https://github.com/wuy24) | member | No Activity Found |
+| [abombin](https://github.com/abombin) | collaborator | No Activity Found |
+| [dnousome](https://github.com/dnousome) | collaborator | No Activity Found |
+| [e-hutchins](https://github.com/e-hutchins) | collaborator | No Activity Found |
+| [fangliu117](https://github.com/fangliu117) | collaborator | 6 |
+| [nanobio-jcjones](https://github.com/nanobio-jcjones) | collaborator | No Activity Found |
+| [skchronicles](https://github.com/skchronicles) | collaborator | No Activity Found |
+| [slsevilla](https://github.com/slsevilla) | collaborator | No Activity Found |
+| [stephchid](https://github.com/stephchid) | collaborator | No Activity Found |
+| [syding327](https://github.com/syding327) | collaborator | No Activity Found |
+| [tsnetterfield](https://github.com/tsnetterfield) | collaborator | No Activity Found |