Temporarily removing prepare actions from CI which were broken #25
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| name: Release | ||
|
Check failure on line 1 in .github/workflows/release.yml
|
||
| on: | ||
| workflow_dispatch: | ||
| inputs: | ||
| version: | ||
| required: true | ||
| default: 'x.y.z' | ||
| permissions: | ||
| contents: write | ||
| pull-requests: write | ||
| jobs: | ||
| checks: | ||
| name: Version check | ||
| runs-on: ubuntu-24.04 | ||
| steps: | ||
| - name: Checkout repository | ||
| id: repo | ||
| uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # v6 | ||
| - name: Set up Python | ||
| uses: actions/setup-python@a309ff8b426b58ec0e2a45f0f869d46889d02405 # v6.2.0 | ||
| with: | ||
| python-version: 3.14.0 | ||
| - name: Get latest release from pip | ||
| id: latestreleased | ||
| run: | | ||
| PREVIOUS_VERSION=$(python -m pip index versions prepmd | grep "prepmd" | cut -d "(" -f2 | cut -d ")" -f1) | ||
| echo "pip_tag=$PREVIOUS_VERSION" >> "$GITHUB_OUTPUT" | ||
| echo $PREVIOUS_VERSION | ||
| # - name: version comparison | ||
| # id: compare | ||
| # run: | | ||
| # pip3 install semver | ||
| # output=$(pysemver compare ${{ steps.latestreleased.outputs.pip_tag }} ${{ github.event.inputs.version }}) | ||
| # if [ $output -ge 0 ]; then exit 1; fi | ||
| # version: | ||
| # name: prepare ${{ github.event.inputs.version }} | ||
| # needs: checks | ||
| # runs-on: ubuntu-24.04 | ||
| # steps: | ||
| # - name: checkout | ||
| # uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # v6 | ||
| # - name: Change version in repo and CITATION.cff | ||
| # run: | | ||
| # Update Python package version | ||
| # sed -i "s/__version__ =.*/__version__ = \"${{ github.event.inputs.version }}\"/g" prepmd/__init__.py | ||
| # Update CITATION.cff version and date-released | ||
| # if [ -f CITATION.cff ]; then | ||
| # sed -i -E "s/^(version:\s*).*/\1${{ github.event.inputs.version }}/" CITATION.cff | ||
| # sed -i -E "s/^(date-released:\s*).*/\1'$(date -u +%F)'/" CITATION.cff | ||
| # fi | ||
| # - name: send PR | ||
| # id: pr_id | ||
| # uses: peter-evans/create-pull-request@c0f553fe549906ede9cf27b5156039d195d2ece0 # v8.1.0 | ||
| # with: | ||
| # commit-message: Update version to ${{ github.event.inputs.version }} | ||
| # branch: version-update | ||
| # title: "Update to version ${{ github.event.inputs.version }}" | ||
| # body: | | ||
| # Update version | ||
| # - Update the __init__.py with new release | ||
| # - Update CITATION.cff version & date-released | ||
| # - Auto-generated by [CI] | ||
| # committer: version-updater <vu.bot@users.noreply.github.com> | ||
| # author: version-updater <vu.bot@users.noreply.github.com> | ||
| # base: main | ||
| # signoff: false | ||
| # draft: false | ||
| # - name: auto approve review | ||
| # uses: hmarr/auto-approve-action@f0939ea97e9205ef24d872e76833fa908a770363 # v4.0.0 | ||
| # with: | ||
| # pull-request-number: ${{ steps.pr_id.outputs.pull-request-number }} | ||
| # review-message: "Auto approved version bump PR" | ||
| # github-token: ${{ secrets.AUTO_PR_MERGE }} | ||
| # - name: merge PR | ||
| # run: gh pr merge --merge --delete-branch --auto "${{ steps.pr_id.outputs.pull-request-number }}" | ||
| # env: | ||
| # GH_TOKEN: ${{ secrets.GITHUB_TOKEN }} | ||
| tag: | ||
| name: tag release | ||
| needs: version | ||
| runs-on: ubuntu-24.04 | ||
| steps: | ||
| - name: Checkout repository | ||
| uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # v6 | ||
| with: | ||
| ref: main | ||
| - name: tag v${{ github.event.inputs.version }} | ||
| run: | | ||
| git config user.name github-actions | ||
| git config user.email github-actions@github.com | ||
| git tag ${{ github.event.inputs.version }} | ||
| git push origin tag ${{ github.event.inputs.version }} | ||
| release: | ||
| name: make github release | ||
| needs: tag | ||
| runs-on: ubuntu-24.04 | ||
| steps: | ||
| - name: create release | ||
| uses: softprops/action-gh-release@v3 | ||
| with: | ||
| name: v${{ github.event.inputs.version }} | ||
| generate_release_notes: true | ||
| tag_name: ${{ github.event.inputs.version }} | ||
| conda: | ||
| name: publish conda to anaconda.org | ||
| needs: [tag, release] | ||
| runs-on: ubuntu-24.04 | ||
| steps: | ||
| - name: Checkout | ||
| uses: actions/checkout@v4 | ||
| with: | ||
| ref: main | ||
| # - name: Update modeller key | ||
| # shell: bash -l {0} | ||
| # run: | | ||
| # sed -i -e 's/SECRET-MODELLER-LICENSE-KEY/${{ secrets.MODELLER_KEY }}/g' $GITHUB_WORKSPACE/conda-recipe/meta.yml | ||
| # sed -i -e 's/SECRET-MODELLER-LICENSE-KEY/${{ secrets.MODELLER_KEY }}/g' $GITHUB_WORKSPACE/conda-recipe/build.sh | ||
| - name: Setup Conda (conda-forge only) | ||
| uses: conda-incubator/setup-miniconda@v3 | ||
| with: | ||
| miniforge-variant: Miniforge3 | ||
| python-version: "3.13.2" | ||
| auto-activate: true | ||
| activate-environment: base | ||
| conda-remove-defaults: true | ||
| channels: conda-forge,salilab | ||
| channel-priority: strict | ||
| - name: Install build tools | ||
| shell: bash -l {0} | ||
| run: | | ||
| conda install -y conda-build anaconda-client | ||
| conda config --set anaconda_upload no | ||
| conda list conda-build | ||
| conda build --help | ||
| - name: Build package | ||
| shell: bash -l {0} | ||
| env: | ||
| PIP_NO_INDEX: "0" | ||
| run: | | ||
| PKG_PATH=$(conda build conda-recipe --output) | ||
| echo "PKG_PATH=$PKG_PATH" >> "$GITHUB_ENV" | ||
| conda build conda-recipe | ||
| test -f "$PKG_PATH" | ||
| echo "Built: $PKG_PATH" | ||
| - name: Upload to Anaconda | ||
| shell: bash -l {0} | ||
| env: | ||
| ANACONDA_API_TOKEN: ${{ secrets.ANACONDA_TOKEN }} | ||
| run: | | ||
| anaconda -t "$ANACONDA_API_TOKEN" upload "$PKG_PATH" --user CCPBioSim --force | ||
