diff --git a/README.md b/README.md
index bdbd7e2..09a2fcd 100644
--- a/README.md
+++ b/README.md
@@ -14,7 +14,11 @@
 A utility to automatically prepare structures from the PDB for molecular dynamics simulation and perform minimisations and simple MD simulations.
 
 ## Example usage
-<img width="768" height="432" alt="demo" src="https://github.com/user-attachments/assets/f7785a4d-ef54-428d-b193-1cb6413bc21e" />
+<p align="center">
+    <img src="docs/_static/logos/prepmd-logo-white-text.svg#gh-dark-mode-only" alt="prepmd logo" width="300"/>
+    <img src="docs/_static/logos/prepmd-logo-black-text.svg#gh-light-mode-only" alt="prepmd logo" width="300"/>
+</p>
+
 
 ## Features
 * Automatically download structures, sequences and metadata from the PDB, PDB-REDO, EMDB and UNIPROT
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\ No newline at end of file
diff --git a/docs/source/conf.py b/docs/source/conf.py
index b7c0c99..3e74e26 100644
--- a/docs/source/conf.py
+++ b/docs/source/conf.py
@@ -6,10 +6,9 @@
 copyright = "2026, CCPBioSim"
 author = "CCPBioSim"
 
-version = "1.0.0"
-release = "1.0.0"
+version = ""
+release = ""
 
-html_logo = "https://github.com/CCPBioSim/branding/raw/refs/heads/main/logos/prepmd/prepmd-logo-black-text.svg"
 
 # -- General configuration ---------------------------------------------------
 
@@ -67,7 +66,12 @@
 
 # -- Options for HTML output -------------------------------------------------
 # https://www.sphinx-doc.org/en/master/usage/configuration.html#options-for-html-output
-# -- Options for HTML output -------------------------------------------------
 
 html_theme = "furo"
+
+html_theme_options = {
+    "light_logo": "logos/prepmd-logo-black.svg",
+    "dark_logo": "logos/prepmd-logo-white.svg",
+}
+
 html_static_path = ["_static"]