DESCRIPTION

Package: STvEA
Type: Package
Title: Spatially-resolved Transcriptomics via Epitope Anchoring
Version: 0.2.0
Authors@R: person("Kiya W.", "Govek", email = "govekk@pennmedicine.upenn.edu", role = c("aut", "cre"))
Description: STvEA is an analysis pipeline for cleaning, clustering, and plotting CODEX and CITE-seq
  protein data, mapping a CODEX dataset to a matching CITE-seq dataset, and assessing colocalization
  of features using the Adjacency Score.
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.2
Imports:
    AdjacencyScore,
    cluster,
    colorspace,
    flowCore,
    ggplot2,
    igraph,
    irlba,
    Matrix,
    mclust,
    methods,
    pheatmap,
    RANN,
    stringr,
    tidyr
Suggests:
    umap,
    reticulate
Remotes:
    CamaraLab/AdjacencyScore,
    davpinto/fastknn
biocViews: