README.md

CardinalWorkflows

Datasets and workflows for Cardinal mass spectrometry imaging package

CardinalWorkflows provides example datasets and vignettes for use with Cardinal.

The datasets include:

• cardinal : An oil painting of a cardinal
• pig206 : A pig fetus cross-section
• rcc : Human renal cell carcinoma (8 matched pairs)

The datasets can be loaded using CardinalWorkflows::exampleMSIData().

User Installation

Bioconductor Release

CardinalWorkflows can be installed via the BiocManager package.

This is the recommended installation method.

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CardinalWorkflows")

The same function can be used to update CardinalWorkflows and other Bioconductor packages.

Once installed, datasets can be loaded with exampleMSIData().

CardinalWorkflows::exampleMSIData("cardinal")