Recommended filter settings no short-read support

[ljwharbers]

Hi,

Thanks for creating SQANTI3!

We got some (noisy) 10X single-cell RNA (cDNA) ONT data and wanted to run this through SQANTI3.
I got a question regarding the filter rules. Is there any recommended set of rules that you suggest we use? We do not have any short-read support and removing the short-read filter from the default filter json results in extremely strict filtering.

Do you have any recommendations on a good balance in filtering rules?

Thanks!
Luuk