sync-fork.yml

name: Sync Fork

on:
  schedule:
    # Runs every week on Sunday at 2 AM UTC
    - cron: '0 2 * * 0'
  workflow_dispatch: # Allows manual triggering

jobs:
  sync:
    runs-on: ubuntu-latest
    
    steps:
    - name: Checkout
      uses: actions/checkout@v4
      with:
        token: ${{ secrets.GITHUB_TOKEN }}
        fetch-depth: 0

    - name: Sync upstream
      run: |
        git config user.name "github-actions[bot]"
        git config user.email "github-actions[bot]@users.noreply.github.com"
        
        git remote add upstream https://github.com/ASAP-CRN/spatial-transcriptomics-wf.git
        
        git fetch upstream
        
        # Merge upstream changes
        git checkout main
        git merge upstream/main
        
        git push origin main