inputs.json

{
  "spatial_visium_analysis.projects": "Array[WomCompositeType {\n samples -> Array[WomCompositeType {\n fastq_I1s -> Array[File]\nfastq_R1s -> Array[File]+\nsample_id -> String\nbatch -> String?\nvisium_capture_area -> String\nvisium_brightfield_image -> File\nfastq_I2s -> Array[File]\nvisium_slide_serial_number -> String\nfastq_R2s -> Array[File]+ \n}]\nasap_dataset_id -> String\nrun_project_cohort_analysis -> Boolean\nraw_data_bucket -> String\nasap_team_id -> String\nstaging_data_buckets -> Array[String]\nasap_dataset_doi_url -> String \n}]",
  "spatial_visium_analysis.spaceranger_reference_data": "File",
  "spatial_visium_analysis.visium_probe_set_csv": "File? (optional)",
  "spatial_visium_analysis.filter_cells_min_counts": "Int (optional, default = 5000)",
  "spatial_visium_analysis.filter_cells_min_genes": "Int (optional, default = 3000)",
  "spatial_visium_analysis.filter_genes_min_cells": "Int (optional, default = 10)",
  "spatial_visium_analysis.filter_mt_max_percent": "Float (optional, default = 0.2)",
  "spatial_visium_analysis.normalize_target_sum": "Float (optional, default = 10000)",
  "spatial_visium_analysis.n_top_genes": "Int (optional, default = 3000)",
  "spatial_visium_analysis.n_comps": "Int (optional, default = 30)",
  "spatial_visium_analysis.batch_key": "String (optional, default = \"batch_id\")",
  "spatial_visium_analysis.leiden_resolution": "Float (optional, default = 0.4)",
  "spatial_visium_analysis.container_registry": "String",
  "spatial_visium_analysis.zones": "String (optional, default = \"us-central1-c us-central1-f\")"
}