Hey. Can you help me with this? Sorry to bother you with this. I'm with problems after the trimming step. The program is running and creating the files in trim dir but when the bsmap is called in the next step it is not finding the trim file that the own program created.
I'm sure it's a simple mistake on my part.
After trim he it is going to bsmap step:
2023-03-16 13:28:30.413695 command: bsmap -a Trim/B14_R1_val_1.fq.gz -b Trim/B14_R2_val_2.fq.gz -z 33 -d /run/media/ambrizi/sata/Master/references/Bos_taurus.ARS-UCD1.2.dna_sm.toplevel.fa -o B14_R1_val_1.bam -U -S 123 -n 1 -r 0 -u -p 2 1>>LiBis_log 2>>BAM_FILE/B14_R1_val_1_originallog.record
Output:
Thanks!
Hey. Can you help me with this? Sorry to bother you with this. I'm with problems after the trimming step. The program is running and creating the files in trim dir but when the bsmap is called in the next step it is not finding the trim file that the own program created.
I'm sure it's a simple mistake on my part.
After trim he it is going to bsmap step:
2023-03-16 13:28:30.413695 command: bsmap -a Trim/B14_R1_val_1.fq.gz -b Trim/B14_R2_val_2.fq.gz -z 33 -d /run/media/ambrizi/sata/Master/references/Bos_taurus.ARS-UCD1.2.dna_sm.toplevel.fa -o B14_R1_val_1.bam -U -S 123 -n 1 -r 0 -u -p 2 1>>LiBis_log 2>>BAM_FILE/B14_R1_val_1_originallog.record
Output:
Thanks!