I have a asm.gfa.gz file for which the testing command bgzip -t asm.gfa.gz returns a non-error code.
Also, bzip -d asm.gfa.gz works.
However, I can't read the file through the Python API:
with (
filepath.open("rb") as f_in,
bgzip.BGZipReader(f_in) as g_in,
):
text_in = io.TextIOWrapper(g_in, encoding="utf-8")
for line in text_in:
print(line)
text_in.close()
Error log attached
If necessary, I can send you in private the asm.gfa.gz file
err.log
I have a
asm.gfa.gzfile for which the testing commandbgzip -t asm.gfa.gzreturns a non-error code.Also,
bzip -d asm.gfa.gzworks.However, I can't read the file through the Python API:
Error log attached
If necessary, I can send you in private the
asm.gfa.gzfileerr.log