Some users run into an error when uploading data with SSDS. This seems to have been fixed by Brian in the Dev branch. So you may need to just check his work and merge dev into master.
Issue Summary
One user reported this issue for his submission.
Here is his output:
INFO:ssds.storage:Copied /public/home/jmonlong/temp/hprc-v1.0-mc-giraffe-dv-models/model.ckpt-364300.data-00000-of-00001 to s3://human-pangenomics/submissions/86B83117-36B8-448B-8F52-2A3E1E2D0AEA--DEEPVARIANT_MC_Y1/model.ckpt-364300.data-00000-of-00001
INFO:ssds.storage:Copied /public/home/jmonlong/temp/hprc-v1.0-mc-giraffe-dv-models/README.txt to s3://human-pangenomics/submissions/86B83117-36B8-448B-8F52-2A3E1E2D0AEA--DEEPVARIANT_MC_Y1/README.txt
INFO:ssds.storage:Copied /public/home/jmonlong/temp/hprc-v1.0-mc-giraffe-dv-models/model.ckpt-364300.index to s3://human-pangenomics/submissions/86B83117-36B8-448B-8F52-2A3E1E2D0AEA--DEEPVARIANT_MC_Y1/model.ckpt-364300.index
SSDSIncorrectChecksum: Incorrect S3 ETag for /public/home/jmonlong/temp/hprc-v1.0-mc-giraffe-dv-models/model.ckpt-364300.meta > s3://human-pangenomics/submissions/86B83117-36B8-448B-8F52-2A3E1E2D0AEA-DEEPVARIANT_MC_Y1/model.ckpt-364300.meta
This error was fixed by re-installing with
pip3 install --upgrade --no-cache-dir git+https://github.com/DataBiosphere/ssds@dev
Some users run into an error when uploading data with SSDS. This seems to have been fixed by Brian in the Dev branch. So you may need to just check his work and merge dev into master.
Issue Summary
One user reported this issue for his submission.
Here is his output:
This error was fixed by re-installing with