httomo/pyproject.toml at main · DiamondLightSource/httomo · GitHub

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[build-system]
requires = ["setuptools>=42", "wheel", "setuptools-git-versioning"]
build-backend = "setuptools.build_meta"

[tool.setuptools]
include-package-data = true

[tool.setuptools.packages.find]
where = ["."]
include = ["httomo*"]

[tool.setuptools-git-versioning]
enabled = true
template = "{tag}"
dev_template = "{tag}"

[project]
name = "httomo"
description = "High Throughput Tomography framework."
readme = "README.rst"
license = {text = "BSD-3-Clause"}
authors = [
    {name = "Daniil Kazantsev", email = "daniil.kazantsev@diamond.ac.uk"},
    {name = "Yousef Moazzam", email = "yousef.moazzam@diamond.ac.uk"},
    {name = "Jessica Verschoyle", email = "jessica.verschoyle@diamond.ac.uk"},
    {name = "Naman Gera", email = "naman.gera@diamond.ac.uk"},
    {name = "Garry ODonnell"},
    {name = "Jacob Williamson"},
    {email = "scientificsoftware@diamond.ac.uk"},
]
classifiers = [
    "Development Status :: 4 - Beta",
    "License :: OSI Approved :: BSD License",
    "Programming Language :: Python :: 3.12",
]

requires-python = ">=3.12"
dynamic = ["version"]
dependencies = [
    "click",
    "cupy==14.0.*",
    "numpy==2.4.*",
    "hdf5plugin",
    "httomo-backends",
    "loguru",
    "mpi4py",
    "pyyaml",
    "tqdm",
    "graypy"
]

[project.scripts]
httomo = "httomo.cli:main"

[project.urls]
repository = "https://github.com/DiamondLightSource/HTTomo"

[project.optional-dependencies]
cpu = ["httomolib" ]
gpu = ["httomolibgpu"]
dev-cpu = [
  "pytest",
  "pytest-cov",
  "pytest-xdist",
  "pytest-mock",
  "flake8",
  "pyproject-flake8",
  "pydocstyle",
  "httomolib[dev]",
  "plumbum",
  "mypy",
  "types-PyYAML",
  "pre-commit"
]
dev-gpu = [
  "pytest",
  "pytest-cov",
  "pytest-xdist",
  "pytest-mock",
  "flake8",
  "pyproject-flake8",
  "pydocstyle",
  "httomolib[dev]",
  "httomolibgpu[dev]",
  "plumbum",
  "mypy",
  "types-PyYAML",
  "pre-commit",
]

[tool.mypy]
# Ignore missing stubs for modules we use
ignore_missing_imports = true
python_version = "3.12"  # make sure we're compatible with 3.12
plugins = 'numpy.typing.mypy_plugin'

[tool.isort]
profile = "black"
float_to_top = true

[tool.flake8]
# Make flake8 respect black's line length (default 88),
max-line-length = 88
extend-ignore = [
    "E203",
    "F811"
]
per-file-ignores = [
    "*pyi:E302"
]

[tool.pydocstyle]
convention = "google"
add-ignore = [
    "D100", # Ignore missing docstrings in public modules
    "D104", # Ignore missing docstrings in public packages
    "D418", # Ignore missing docstrings in dunder methods; See: https://github.com/PyCQA/pydocstyle/issues/525
]

[tool.pytest.ini_options]
minversion = "6.0"
addopts = [
   "-vv",
   "-ra",
   "-q",
   "--tb=native",
]
testpaths = [
    "tests",
]
filterwarnings = [
    "ignore::ImportWarning",
    "ignore:distutils:DeprecationWarning:numexpr"
]


[tool.coverage.run]
data_file = "/tmp/httomo.coverage"

[tool.coverage.paths]
# Tests are run from installed location, map back to the src directory
source = [
    "httomo",
    "**/site-packages/"
]