diff --git a/docs/inputs/agents.rst b/docs/inputs/agents.rst
index da2245d7..40e724dd 100644
--- a/docs/inputs/agents.rst
+++ b/docs/inputs/agents.rst
@@ -42,6 +42,7 @@ Type
    technologies. If only "New" agents are included, they will also invest to make up for
    decommissioned assets, but the end mix might be different than using a specialised
    "Retrofit" agent for that.
+   *Note: Retrofit agents will be deprecated in a future release.*
 
 AgentShare
    Name used to assign a fraction of existing capacity to the agent in the :ref:`inputs-technodata` file.
diff --git a/src/muse/readers/csv.py b/src/muse/readers/csv.py
index 9e681863..5a7efbc7 100644
--- a/src/muse/readers/csv.py
+++ b/src/muse/readers/csv.py
@@ -482,6 +482,8 @@ def read_csv_agent_parameters(filename) -> list:
     Returns a list of dictionaries, where each dictionary can be used to instantiate an
     agent in :py:func:`muse.agents.factories.factory`.
     """
+    from logging import getLogger
+
     from muse.readers import camel_to_snake
 
     if (
@@ -534,6 +536,15 @@ def read_csv_agent_parameters(filename) -> list:
             "agent": "agent",
             "default": "agent",
         }[getattr(row, "Type", "agent").lower()]
+
+        # Add warning about retrofit agents
+        if agent_type == "retrofit":
+            msg = (
+                "Retrofit agents will be deprecated in a future release. "
+                "Please modify your model to use only agents of the 'New' type."
+            )
+            getLogger(__name__).warning(msg)
+
         data = {
             "name": row.Name,
             "region": row.RegionName,