IN PROGRESS
Wrapper scripts and tools for annotation of SNPs and results from GWAS and QTL studies
See requirements files and Dockerfile for full information. At the least you'll need:
- CGATCore
- R >= 3.2
- Python >= 3.5
- r-docopt
- r-data.table
- r-ggplot2
pip install git+git://github.com/EpiCompBio/downstream_annotation.git# Create a folder or a whole data science project, e.g. project_quickstart -n annotate_qtl
cd annotate_qtl/results
xxxx- Pull requests welcome!
If you have any issues, pull requests, etc. please report them in the issue tracker.