As we can see in the bibliography the common threshold used in the epitope prediction experiments is 4.5 Armstrongs (see PECAN, EpiPred). On your paper you seem to use 2 Armstrong as a threshold but on the comparison results at table 3 you compare your results with those of 4.5 Armstong. So what threshold value did you use as threshold for the epitope experiment?
As we can see in the bibliography the common threshold used in the epitope prediction experiments is 4.5 Armstrongs (see PECAN, EpiPred). On your paper you seem to use 2 Armstrong as a threshold but on the comparison results at table 3 you compare your results with those of 4.5 Armstong. So what threshold value did you use as threshold for the epitope experiment?