From 4c7a6562fb6e436405be67d18bf8cb6f4cf18633 Mon Sep 17 00:00:00 2001 From: Dan Tenenbaum Date: Tue, 17 Feb 2026 19:13:59 -0800 Subject: [PATCH] remove manual last-modified-dates from yaml frontmatter This ensures that the generated/displayed dates do not get out of date. Closes #1125 . See my [comment](https://github.com/FredHutch/wiki/issues/1125#issuecomment-3918297749) there for details. --- _compdemos/Apptainer.md | 1 - _compdemos/Docker.md | 1 - _compdemos/alphafold3.md | 1 - _compdemos/aspera-on-nx.md | 1 - _compdemos/managing-module-versions.md | 1 - _compdemos/microbiome_tools.md | 1 - _compdemos/motuz.md | 1 - _compdemos/mydb.md | 1 - _compdemos/nextflow.md | 1 - _compdemos/snapshots.md | 1 - _compdemos/store_job_local.md | 1 - _compdemos/toolbox.md | 1 - _compdemos/vscode_markdown_howto.md | 1 - _contributors/STTR.md | 1 - _contributors/kmcclosk.md | 1 - _contributors/ptvan.md | 1 - _datademos/cbio_examples_of_using_cbio.md | 1 - _datademos/cbio_how_to_prepare_files.md | 1 - _datademos/cbio_how_to_upload_data_to_cbio_s3.md | 1 - _datademos/cbio_test_access_to_cbio_s3_bucket.md | 1 - _datademos/tidy-data.md | 1 - _datascience/wdl_execution_engines.md | 1 - _pathways/path-cbio-fh-instance.md | 1 - _pathways/path-interactive.md | 1 - _scicomputing/access_overview.md | 1 - _scicomputing/access_permissions.md | 1 - _scicomputing/comp_index.md | 1 - _scicomputing/compute_accounts.md | 1 - _scicomputing/compute_environments.md | 1 - _scicomputing/compute_gpu.md | 3 +-- _scicomputing/compute_job_scheduling.md | 1 - _scicomputing/compute_parallel.md | 1 - _scicomputing/hutchgo_guest_collection.md | 1 - _scicomputing/hutchgo_overview.md | 1 - _scicomputing/reference_training.md | 1 - _scicomputing/store_databases.md | 1 - _scicomputing/store_overview.md | 1 - contributorTemplate.md | 1 - 38 files changed, 1 insertion(+), 39 deletions(-) diff --git a/_compdemos/Apptainer.md b/_compdemos/Apptainer.md index f0f84a143..3634b0e8c 100644 --- a/_compdemos/Apptainer.md +++ b/_compdemos/Apptainer.md @@ -1,6 +1,5 @@ --- title: Using Apptainer Containers -last_modified_at: 2021-07-30 main_author: Michael Gutteridge primary_reviewers: bmcgough, atombaby --- diff --git a/_compdemos/Docker.md b/_compdemos/Docker.md index 5d5c66451..b1ee23543 100644 --- a/_compdemos/Docker.md +++ b/_compdemos/Docker.md @@ -1,6 +1,5 @@ --- title: Using Docker at Fred Hutch -last_modified_at: 2026-01-27 main_author: Taylor Firman, Emma Bishop original_author: Dirk Petersen primary_reviewers: dtenenba, dirkpetersen, tefirman diff --git a/_compdemos/alphafold3.md b/_compdemos/alphafold3.md index 9b37956fb..010c00e36 100644 --- a/_compdemos/alphafold3.md +++ b/_compdemos/alphafold3.md @@ -1,6 +1,5 @@ --- title: AlphaFold-3 -last_modified_at: 2024-12-19 main_author: John Dey primary_reviewers: --- diff --git a/_compdemos/aspera-on-nx.md b/_compdemos/aspera-on-nx.md index 05f173ece..d59147aea 100644 --- a/_compdemos/aspera-on-nx.md +++ b/_compdemos/aspera-on-nx.md @@ -1,6 +1,5 @@ --- title: Managing Aspera Connect on NoMachine -last_modified_at: 2021-05-25 main_author: Michael Gutteridge primary_reviewers: atombaby --- diff --git a/_compdemos/managing-module-versions.md b/_compdemos/managing-module-versions.md index 1b92a56c2..50bdc4583 100644 --- a/_compdemos/managing-module-versions.md +++ b/_compdemos/managing-module-versions.md @@ -1,6 +1,5 @@ --- title: Managing Module Versions -last_modified_at: 2023-05-24 main_author: Michael Gutteridge primary_reviewers: atombaby --- diff --git a/_compdemos/microbiome_tools.md b/_compdemos/microbiome_tools.md index 151a814e6..06d511dc0 100644 --- a/_compdemos/microbiome_tools.md +++ b/_compdemos/microbiome_tools.md @@ -1,6 +1,5 @@ --- title: Bioinformatics Tools for Microbiome Analysis -last_modified_at: 2020-03-25 primary_reviewers: sminot --- diff --git a/_compdemos/motuz.md b/_compdemos/motuz.md index eef6509c5..2724fc747 100644 --- a/_compdemos/motuz.md +++ b/_compdemos/motuz.md @@ -1,6 +1,5 @@ --- title: Using Motuz to Move Large Data -last_modified_at: 2019-08-22 main_author: Dan Tenenbaum primary_reviewers: dtenenba --- diff --git a/_compdemos/mydb.md b/_compdemos/mydb.md index f8f3a98c9..0d809b95d 100644 --- a/_compdemos/mydb.md +++ b/_compdemos/mydb.md @@ -1,6 +1,5 @@ --- title: Configuring Databases on MyDB -last_modified_at: 2023-02-02 primary_reviewers: fizwit, atombaby --- diff --git a/_compdemos/nextflow.md b/_compdemos/nextflow.md index 9236c1551..e18bd01eb 100644 --- a/_compdemos/nextflow.md +++ b/_compdemos/nextflow.md @@ -1,6 +1,5 @@ --- title: Nextflow - an Emerging Service for Workflow Management -last_modified_at: 2021-04-14 primary_reviewers: sminot --- diff --git a/_compdemos/snapshots.md b/_compdemos/snapshots.md index f6c515ba9..b193d7456 100644 --- a/_compdemos/snapshots.md +++ b/_compdemos/snapshots.md @@ -1,6 +1,5 @@ --- title: Snapshots -last_modified_at: 2018-12-10 main_author: Ben McGough primary_reviewers: --- diff --git a/_compdemos/store_job_local.md b/_compdemos/store_job_local.md index 03419dca4..65a247c8f 100644 --- a/_compdemos/store_job_local.md +++ b/_compdemos/store_job_local.md @@ -1,6 +1,5 @@ --- title: Job Local Storage -last_modified_at: 2023-04-28 main_author: Michael Gutteridge primary_reviewers: atombaby --- diff --git a/_compdemos/toolbox.md b/_compdemos/toolbox.md index a89e7385f..060402636 100644 --- a/_compdemos/toolbox.md +++ b/_compdemos/toolbox.md @@ -1,6 +1,5 @@ --- title: Using Toolbox to Get Hutch Master Data -last_modified_at: 2019-01-13 main_author: Dirk Petersen primary_reviewers: mrg, dirkpetersen --- diff --git a/_compdemos/vscode_markdown_howto.md b/_compdemos/vscode_markdown_howto.md index aafb4c898..ef1245573 100644 --- a/_compdemos/vscode_markdown_howto.md +++ b/_compdemos/vscode_markdown_howto.md @@ -1,6 +1,5 @@ --- title: Using Markdown with Visual Studio Code -last_modified_at: 2018-06-07 main_author: Robert McDermott --- diff --git a/_contributors/STTR.md b/_contributors/STTR.md index 789984988..6309d0ae2 100644 --- a/_contributors/STTR.md +++ b/_contributors/STTR.md @@ -1,6 +1,5 @@ --- title: STTR Group -last_modified_at: 2018-09-06 --- ## Affiliation diff --git a/_contributors/kmcclosk.md b/_contributors/kmcclosk.md index 73a59854a..352461dcc 100644 --- a/_contributors/kmcclosk.md +++ b/_contributors/kmcclosk.md @@ -1,6 +1,5 @@ --- title: Kylie McCloskey -last_modified_at: 2018-09-06 --- ## Affiliation diff --git a/_contributors/ptvan.md b/_contributors/ptvan.md index 7fa0a8627..ce6339339 100644 --- a/_contributors/ptvan.md +++ b/_contributors/ptvan.md @@ -1,6 +1,5 @@ --- title: Phu T. Van -last_modified_at: 2018-06-06 --- ## Affiliation Vaccine & Infectious Disease Division diff --git a/_datademos/cbio_examples_of_using_cbio.md b/_datademos/cbio_examples_of_using_cbio.md index 34493cfac..bd62af4ae 100644 --- a/_datademos/cbio_examples_of_using_cbio.md +++ b/_datademos/cbio_examples_of_using_cbio.md @@ -1,6 +1,5 @@ --- title: How you can use cBioPortal -last_modified_at: 2025-04-18 main_authors: sitapriyamoorthi primary_reviewers: tfirman, laderast --- diff --git a/_datademos/cbio_how_to_prepare_files.md b/_datademos/cbio_how_to_prepare_files.md index 38ef39c3c..341ba9a65 100644 --- a/_datademos/cbio_how_to_prepare_files.md +++ b/_datademos/cbio_how_to_prepare_files.md @@ -1,6 +1,5 @@ --- title: Helpful tips on how to prepare files for cBioPortal -last_modified_at: 2025-04-18 main_authors: sitapriyamoorthi primary_reviewers: tfirman, laderast --- diff --git a/_datademos/cbio_how_to_upload_data_to_cbio_s3.md b/_datademos/cbio_how_to_upload_data_to_cbio_s3.md index 0fddd52e1..fae3b6ab4 100644 --- a/_datademos/cbio_how_to_upload_data_to_cbio_s3.md +++ b/_datademos/cbio_how_to_upload_data_to_cbio_s3.md @@ -1,6 +1,5 @@ --- title: Uploading your study into `fh-dasl-cbio` S3 bucket -last_modified_at: 2025-04-18 main_authors: sitapriyamoorthi primary_reviewers: tfirman, laderast --- diff --git a/_datademos/cbio_test_access_to_cbio_s3_bucket.md b/_datademos/cbio_test_access_to_cbio_s3_bucket.md index 6cfb898f1..67a5bbdd8 100644 --- a/_datademos/cbio_test_access_to_cbio_s3_bucket.md +++ b/_datademos/cbio_test_access_to_cbio_s3_bucket.md @@ -1,6 +1,5 @@ --- title: Testing access to Fred Hutch cBioPortal S3 bucket -last_modified_at: 2025-04-18 main_authors: sitapriyamoorthi primary_reviewers: tfirman, laderast --- diff --git a/_datademos/tidy-data.md b/_datademos/tidy-data.md index ca9cfc81b..3e680c315 100644 --- a/_datademos/tidy-data.md +++ b/_datademos/tidy-data.md @@ -1,6 +1,5 @@ --- title: Guidance for Making "Tidy" Data -last_modified_at: 2019-11-06 main_author: primary_reviewers: ptvan --- diff --git a/_datascience/wdl_execution_engines.md b/_datascience/wdl_execution_engines.md index 57b27e437..ad4dba574 100644 --- a/_datascience/wdl_execution_engines.md +++ b/_datascience/wdl_execution_engines.md @@ -1,6 +1,5 @@ --- title: WDL Execution Engines -last_modified_at: 2025-11-11 --- ## What is an Execution Engine? diff --git a/_pathways/path-cbio-fh-instance.md b/_pathways/path-cbio-fh-instance.md index f0b8bbff8..f8ff915a8 100644 --- a/_pathways/path-cbio-fh-instance.md +++ b/_pathways/path-cbio-fh-instance.md @@ -1,6 +1,5 @@ --- title: How to upload your study into the Fred Hutch instance of cBioPortal -last_modified_at: 2025-04-18 main_authors: sitapriyamoorthi primary_reviewers: tfirman, laderast --- diff --git a/_pathways/path-interactive.md b/_pathways/path-interactive.md index 4d4311da9..b8130a346 100644 --- a/_pathways/path-interactive.md +++ b/_pathways/path-interactive.md @@ -1,6 +1,5 @@ --- title: Getting and Using Interactive Sessions -last_modified_at: 2024-05-29 primary_reviewers: atombaby --- diff --git a/_scicomputing/access_overview.md b/_scicomputing/access_overview.md index 00cd47f0b..914b0232e 100644 --- a/_scicomputing/access_overview.md +++ b/_scicomputing/access_overview.md @@ -1,6 +1,5 @@ --- title: Computing Access Overview -last_modified_at: 2019-09-05 primary_reviewers: vortexing --- This overview describes what types of credentials are needed for [various Fred Hutch computing resources](/compdemos/) and provides instructions for accessing those supported computing resources. diff --git a/_scicomputing/access_permissions.md b/_scicomputing/access_permissions.md index 7b37c0d00..6e07c867c 100644 --- a/_scicomputing/access_permissions.md +++ b/_scicomputing/access_permissions.md @@ -1,6 +1,5 @@ --- title: Permissions -last_modified_at: 2019-09-05 primary_reviewers: --- diff --git a/_scicomputing/comp_index.md b/_scicomputing/comp_index.md index fbd7c5f04..ebedf8067 100644 --- a/_scicomputing/comp_index.md +++ b/_scicomputing/comp_index.md @@ -1,6 +1,5 @@ --- title: Overview of Scientific Computing at Fred Hutch -last_modified_at: 2019-05-30 primary_reviewers: vortexing --- Various groups support computational capacity at the Hutch. Center IT supports general computing tasks, such as email and desktop computer software; further information can be found on the Center IT pages in Centernet. This section of the Wiki represents information relating to research and scientific computing, which generally require additional software, hardware, and skills. If you have questions that aren't answered here, please email `SciComp` or ask a public question on [The Fred Hutch Data Community Slack Workspace](https://fhdata.slack.com) in the `question-and-answer` channel. diff --git a/_scicomputing/compute_accounts.md b/_scicomputing/compute_accounts.md index e61723ac9..5d1a6be3b 100644 --- a/_scicomputing/compute_accounts.md +++ b/_scicomputing/compute_accounts.md @@ -1,6 +1,5 @@ --- title: Cluster Accounts -last_modified_at: 2021-02-09 primary_reviewer: atombaby --- diff --git a/_scicomputing/compute_environments.md b/_scicomputing/compute_environments.md index 06b2e9be2..ff79dfc43 100644 --- a/_scicomputing/compute_environments.md +++ b/_scicomputing/compute_environments.md @@ -1,6 +1,5 @@ --- title: Computing Environments and Containers -last_modified_at: 2025-11-11 primary_reviewers: bmcgough --- diff --git a/_scicomputing/compute_gpu.md b/_scicomputing/compute_gpu.md index 114df80be..e47551316 100644 --- a/_scicomputing/compute_gpu.md +++ b/_scicomputing/compute_gpu.md @@ -1,6 +1,5 @@ --- title: Computing with GPUs -last_modified_at: 2023-03-31 primary_reviewer: atombaby --- @@ -66,4 +65,4 @@ When submitting jobs make sure that your current environment does not have modul ## Using GPUs -When your job is assigned a GPU, Slurm sets the environment variable CUDA_VISIBLE_DEVICES. This environment variable indicates the assigned GPU- most CUDA tools (e.g. tensorflow) use this to restrict execution to that device. \ No newline at end of file +When your job is assigned a GPU, Slurm sets the environment variable CUDA_VISIBLE_DEVICES. This environment variable indicates the assigned GPU- most CUDA tools (e.g. tensorflow) use this to restrict execution to that device. diff --git a/_scicomputing/compute_job_scheduling.md b/_scicomputing/compute_job_scheduling.md index 712f83a30..05557e239 100644 --- a/_scicomputing/compute_job_scheduling.md +++ b/_scicomputing/compute_job_scheduling.md @@ -1,6 +1,5 @@ --- title: Gizmo Job Scheduling -last_modified_at: 2021-02-09 primary_reviewer: atombaby --- diff --git a/_scicomputing/compute_parallel.md b/_scicomputing/compute_parallel.md index 40a9aed03..7ca546d2e 100644 --- a/_scicomputing/compute_parallel.md +++ b/_scicomputing/compute_parallel.md @@ -1,6 +1,5 @@ --- title: Parallel Computing on Slurm Clusters -last_modified_at: 2019-05-02 primary_reviewer: atombaby --- diff --git a/_scicomputing/hutchgo_guest_collection.md b/_scicomputing/hutchgo_guest_collection.md index c4bb32043..077569f6b 100644 --- a/_scicomputing/hutchgo_guest_collection.md +++ b/_scicomputing/hutchgo_guest_collection.md @@ -1,6 +1,5 @@ --- title: Creating Guest Collections in HutchGO -last_modified_at: 2024-07-01 primary_reviewers: atombaby --- diff --git a/_scicomputing/hutchgo_overview.md b/_scicomputing/hutchgo_overview.md index e89375045..05e14f8ea 100644 --- a/_scicomputing/hutchgo_overview.md +++ b/_scicomputing/hutchgo_overview.md @@ -1,6 +1,5 @@ --- title: Hutch Globus Online - HutchGO -last_modified_at: 2024-08-16 primary_reviewers: atombaby --- diff --git a/_scicomputing/reference_training.md b/_scicomputing/reference_training.md index dc8f591b3..dd8dc2479 100644 --- a/_scicomputing/reference_training.md +++ b/_scicomputing/reference_training.md @@ -1,6 +1,5 @@ --- title: Training, Community and Finding Help -last_modified_at: 2020-06-02 primary_reviewers: k8hertweck, vortexing --- There are a variety of resources for training on various aspects of bioinformatics, analytics and data skills available at the Fred Hutch, in the Seattle area and on the web. diff --git a/_scicomputing/store_databases.md b/_scicomputing/store_databases.md index 90bc426e8..ccfb01c72 100644 --- a/_scicomputing/store_databases.md +++ b/_scicomputing/store_databases.md @@ -1,6 +1,5 @@ --- title: Data Storage in Databases -last_modified_at: 2018-04-01 primary_reviewers: vortexing --- diff --git a/_scicomputing/store_overview.md b/_scicomputing/store_overview.md index f3964b4e6..c360cdb12 100644 --- a/_scicomputing/store_overview.md +++ b/_scicomputing/store_overview.md @@ -1,6 +1,5 @@ --- title: Overview of Data Storage at Fred Hutch -last_modified_at: 2023-03-24 primary_reviewers: --- diff --git a/contributorTemplate.md b/contributorTemplate.md index 84acaef18..f6b9734b0 100644 --- a/contributorTemplate.md +++ b/contributorTemplate.md @@ -1,6 +1,5 @@ --- title: Your Name -last_modified_at: 2018-06-06 --- ## Affiliation Clinical Research Division