NOAA method for FASTQ to ASV: Tourmaline using QIIME 2

[cuttlefishh]

Our workflow is described here: https://github.com/cuttlefishh/tourmaline

[cuttlefishh]

The goal of sharing ASV tables across projects and organizations is also synergistic with the Earth Microbiome Project (https://github.com/biocore/emp) and the National Microbiome Data Collaborative.

[pbuttigieg]

Thanks @cuttlefishh

We fork the Tourmaline repo into this org.

For this effort, I think we should grab a release or stable version of it and place the code into an EMP or NOAA folder.

Could you do this in a PR?

[cuttlefishh]

Hey @pbuttigieg, happy to do whatever is best. What if I created a NOAA folder and put in it a README.md with a brief description of what Tourmaline does, then point folks to the current/stable release? I could clone the whole repo into the folder, but I'd be concerned it wouldn't stay up-to-date.

[cuttlefishh]

Note: Our workflow should be referred to as the "NOAA-AOML" workflow as NOAA is a huge organization and there are others doing omics with other workflows.

[pbuttigieg]

What if I created a NOAA folder and put in it a README.md with a brief description of what Tourmaline does, then point folks to the current/stable release?

Sounds good!
Could you make sure the README is linked to a stable version or release of the workflow?

Note: Our workflow should be referred to as the "NOAA-AOML" workflow as NOAA is a huge organization and there are others doing omics with other workflows.

Got it - would be good to have that in the README too.