AWI method fastq to biom

[PyoneerO]

Hello,
thanks for invitation to contribute. Below you find the link to the repo of the pipeline used for many amplicon analyses at the AWI (www.awi.de).
https://github.com/PyoneerO/qzip
Best
Stefan

[pbuttigieg]

Many thanks @PyoneerO!

I've forked this into the GLOMICON org so it's in our index.

We're discussing how to best share these workflows/pipelines across observatories (e.g. #11). Happy to hear your thoughts there!

[pbuttigieg]

I see the Qzip pipeline is already installable with a dockerfile - could you note this in #11?