README.md

FAIT

FFAS based Aperiodicity detection using Image processing Techniques

Dependencies

You will have to install the following packages:

• Python link
• Biopython link
• Numpy link
• Scipy link
• Matplotlib link

These dependencies are typically available in your standard package management system such as apt or yum on Linux or macports on OSX. Windows is currently not supported.

Installation

Clone / download this repositoy. You will also have to download FFAS from here and follow the respective installation procedure.

Running FAIT

1. Run FFAS to generate the profile-profile scoring matrix by running ffasMatrix.sh reference.fasta query.fasta pathToOutputMatrix pathToOutputAlignment
2. Run FAIT to process the profile-profile scoring matrix by fait.py -f pathToOutputMatrix -q query.fasta