Issues in the DataFrame

[kroy3]

Hi everyone,

I encountered an issues regarding the FileNotFoundError and tried to slove the error.

If you are working with the following jupyter file:

"AF_Cluster-main\data_sep2022\03_KaiBRS_and_pt_muts\KaiBRS_msas_for_AFclusteru 0_analyze_cluster_enrichments.ipynb"

You might going to be encountered this error:

FileNotFoundError: [Errno 2] No such file or directory: 'KaiBRS_msas_for_AFcluster/preds_3r/KAIBRS_163.a3m'

It is because the 'pdb' column retrieve the file as "preds_3r/KAIBRS_163.a3m"

I replaced it with the following code:

df['pdb'] = df['pdb'].str.replace('preds_3r/KAIBRS_', 'KAIBRS_', regex=False)