add_track width etc

[joe-jhou2]

Hi, I wonder if any parameter has been implemented to modify the width, and font size in the add_track function? Thanks.

[joe-jhou2]

The other issue I encounter is, cluster_colors conflict with circ_data$color variable.
When I assign color in the circ_data, and leave col.use= NULL. the UMAP will use the color I assign into the circ_data. But the cluster color on the track will be random.

If I set up the cluster_colors by c("#005300", "#B00068", "#1CBE4F) or ("CD3 EM" = "#005300", "CD3 Effector" = "#B00068"). It seems the color in circ_data will be deprecated. but cluster_colors wouldn't be used in the order of clusters.

[HaojiaWu]

Hi @mimisikai
You can rearrange the cell type order in your Seurat object as per your preference using the following code:

levels(your_seurat) <- c("desired_order_of_cell_types")

Then make sure to assign colors in the same order as the cell types you've just set:

color_celltype <- c("colors_corresponding_to_each_cell_type")

Let me know if that doesn't work.

[HaojiaWu]

track width is now controlled by the track_lwd parameter.
Please reinstall the package:

devtools::install_github("HaojiaWu/plot1cell")