Does TRCmatch works with DNN

[saramoein372]

Hello,

I have a question about TCRmatch: does TCRmatch works based on deep neural network for peptide prediction?

Thanks,
Sara

[raphaeltrevizani]

Hi Sara.
TCRMatch is not based on DNN for peptide prediction. It uses a sequence similarity k-mer approach matching the query to the CDR3b sequences in the IEDB database to predict whether a given TCR sequence is likely to recognize a specific peptide as an epitope.

[saramoein372]

Thank you for the answer.

…

On Mon, Aug 14, 2023 at 7:53 AM raphaeltrevizani ***@***.***> wrote: Hi Sara. TCRMatch is not based on DNN for peptide prediction. It uses a sequence similarity k-mer approach matching the query to the CDR3b sequences in the IEDB database to predict whether a given TCR sequence is likely to recognize a specific peptide as an epitope. — Reply to this email directly, view it on GitHub <#48 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AVVJONVHGQFVJDAVSLOPGQDXVIGTLANCNFSM6AAAAAA3PCNCO4> . You are receiving this because you authored the thread.Message ID: ***@***.***>