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data_processing.py
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269 lines (197 loc) · 8.56 KB
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import os
import subprocess
import platform
import numpy as np
import pandas as pd
import xarray as xr
import intake
import swifter
from multiprocessing import cpu_count
from xmip.preprocessing import combined_preprocessing
from npz_t_engine import apply_g_critic, apply_hyperplane
def setup_environment():
if "ESMFMKFILE" in os.environ:
print(f"✅ ESMFMKFILE already set: {os.environ['ESMFMKFILE']}")
return
try:
path_check = subprocess.check_output(["which", "esmf_regrid"], text=True).strip()
if path_check:
base_path = os.path.dirname(os.path.dirname(path_check))
potential_mk = os.path.join(base_path, "lib", "esmf.mk")
if os.path.exists(potential_mk):
os.environ["ESMFMKFILE"] = potential_mk
print(f"✅ ESMFMKFILE found via system: {os.environ['ESMFMKFILE']}")
return
except Exception:
pass
try:
home = os.environ["HOME"]
search_path = os.path.join(home, "git/esmf/lib/libO/")
if os.path.exists(search_path):
subdirs = os.listdir(search_path)
if subdirs:
selected_dir = subdirs[0]
os.environ["ESMFMKFILE"] = os.path.join(search_path, selected_dir, "esmf.mk")
print(f"✅ ESMFMKFILE found in git folder: {os.environ['ESMFMKFILE']}")
return
except Exception:
pass
print("❌ ESMFMKFILE not found. Please install ESMF or set the variable manually.")
# --- Process Logic ---
def get_cmip6_datatree(
source_ids=["GFDL-ESM4"],
variable_ids=["tos", "mlotst"],
experiment_ids=["ssp585","historical"],
table_id="Omon",
grid_label="gn"
):
print(f"🔍 Searching in Pangeo: {source_ids} | {experiment_ids}...")
col = intake.open_esm_datastore("https://storage.googleapis.com/cmip6/pangeo-cmip6.json")
cat = col.search(
source_id=source_ids,
variable_id=variable_ids,
table_id=table_id,
grid_label=grid_label,
experiment_id=experiment_ids,
require_all_on=["source_id"],
)
if len(cat) == 0:
raise ValueError("❌ There are no values")
kwargs = dict(
preprocess=combined_preprocessing,
xarray_open_kwargs=dict(use_cftime=True),
storage_options={"token": "anon"},
join="outer",
compat="no_conflicts",
)
cat.esmcat.aggregation_control.groupby_attrs = ["source_id", "experiment_id"]
return cat.to_datatree(**kwargs)
def load_dataframe(model_name, scenario_name, start_slice, end_slice):
ssp585 = dt[model_name][scenario_name].ds
da_temp = ssp585["tos"].sel(time=slice(start_slice, end_slice))
da_mld = ssp585["mlotst"].sel(time=slice(start_slice, end_slice))
df_temp = da_temp.to_dataframe(name="tos").reset_index()
df_mld = da_mld.to_dataframe(name="mlotst").reset_index()
df_temp["month"] = [t.month for t in df_temp["time"]]
df_mld["month"] = [t.month for t in df_mld["time"]]
df_temp_monthly = (
df_temp.groupby(["lat", "lon", "month"])["tos"]
.mean()
.reset_index()
.sort_values(by=["lat", "lon", "month"])
)
df_mld_monthly = (
df_mld.groupby(["lat", "lon", "month"])["mlotst"]
.mean()
.reset_index()
.sort_values(by=["lat", "lon", "month"])
)
df_temp_vec = df_temp_monthly.groupby(["lat", "lon"])["tos"].apply(lambda v: v.tolist()).reset_index()
df_mld_vec = df_mld_monthly.groupby(["lat", "lon"])["mlotst"].apply(lambda v: v.tolist()).reset_index()
df_temp_vec = df_temp_vec.rename(columns={"tos": "temperature_vector"})
df_mld_vec = df_mld_vec.rename(columns={"mlotst": "mld_vector"})
df_merged = df_temp_vec.merge(df_mld_vec, on=["lat", "lon"], how="inner")
df_merged["model_name"] = model_name
df_merged["scenario_name"] = scenario_name
return df_merged
def load_hybrid(model_name, scenario_name, target_year, member_idx=0):
ds_full = dt[model_name][scenario_name].ds
ds_hist = dt[model_name]["historical"].ds
ds_hist=ds_hist.isel(member_id=member_idx)
ds_hist = ds_hist.sel(time=slice("1960", "2000"))
da_temp_base = ds_hist["tos"].mean(dim="time", keep_attrs=True)
da_mld_base = ds_hist["mlotst"].groupby("time.year").max().mean(dim="year", keep_attrs=True)
ds_target = ds_full.sel(time=str(target_year))
if ds_target.sizes['time'] != 12:
print(f"⚠️ Warming: The year {target_year} have {ds_target.sizes['time']} time steps (12 was expected).")
vals_temp_target = ds_target["tos"].values
vals_mld_target = ds_target["mlotst"].values
lat_2d, lon_2d, temp_base_2d, mld_base_2d = xr.broadcast(
ds_full.lat, ds_full.lon, da_temp_base, da_mld_base
)
lat_flat = lat_2d.values.flatten()
lon_flat = lon_2d.values.flatten()
temp_base_flat = temp_base_2d.values.flatten()
mld_base_flat = mld_base_2d.values.flatten()
temp_vec_flat = vals_temp_target.reshape(12, -1).T
mld_vec_flat = vals_mld_target.reshape(12, -1).T
if len(lat_flat) != len(temp_vec_flat):
raise ValueError(f"Grid problem: Coordinated {len(lat_flat)} vs Data {len(temp_vec_flat)}")
df = pd.DataFrame({
"lat": lat_flat,
"lon": lon_flat,
"temp_mean_hist": temp_base_flat,
"mld_max_hist": mld_base_flat,
"temp_vec_year": list(temp_vec_flat),
"mld_vec_year": list(mld_vec_flat)
})
df["model"] = model_name
df["scenario"] = scenario_name
df["year_data"] = target_year
return df
def mask_ice_with_nan_list(cell, threshold=-1.8):
nan_list = [np.nan] * 12
try:
if isinstance(cell, list) and len(cell) > 0:
arr = cell
else:
return nan_list
if np.all(np.isnan(arr)) or np.nanmin(arr) <= threshold:
return nan_list
return arr
except:
return nan_list
def clean_data(df):
df['temperature_vector'] = df['temperature_vector'].apply(mask_ice_with_nan_list)
df['mld_vector'] = df['mld_vector'].apply(mask_ice_with_nan_list)
return df
def compute_g_critic(df,year="2024", model="GFDL-ESM4", scenario="ssp585"):
df = clean_data(df)
df = apply_g_critic(df)
output_dir = "data"
if not os.path.exists(output_dir):
os.makedirs(output_dir)
df.to_parquet(os.path.join(output_dir, f"g_critic_{year}_{scenario}_{model}.parquet"))
def compute_hyperplane(df):
df = clean_data(df)
df = apply_hyperplane(df)
return df
def calculate_mean_temp(row):
temp_vec = row["temp_vec_year"]
if isinstance(temp_vec, (list, np.ndarray)):
return np.mean(temp_vec)
return np.nan
def calculate_max_mld(row):
mld_vec = row["mld_vec_year"]
if isinstance(mld_vec, (list, np.ndarray)):
return np.max(mld_vec)
return np.nan
def data_merged(df_hyper,df_hybrid,year="2024",scenario="ssp585",model="GFDL-ESM4"):
df_hybrid['lat'] = df_hybrid['lat'].astype('float64')
df_hybrid['lon'] = df_hybrid['lon'].astype('float64')
df_merged = pd.merge(df_hyper, df_hybrid, on=['lat', 'lon'], how='inner')
df_merged["temp_mean_year"] = df_merged.apply(calculate_mean_temp, axis=1)
df_merged["mld_max_year"] = df_merged.apply(calculate_max_mld, axis=1)
df_merged["sens_a"] = df_merged["S_temp"] * (df_merged["temp_mean_year"]- df_merged["temp_mean_hist"])
df_merged["sens_b"] = df_merged["S_mld"] * (df_merged["mld_max_year"] - df_merged["mld_max_hist"])
df_merged["sens"] = df_merged["sens_a"].abs()/(df_merged["sens_a"].abs() + df_merged["sens_b"].abs())
output_dir = "data"
if not os.path.exists(output_dir):
os.makedirs(output_dir)
df_merged.to_parquet(os.path.join(output_dir, f"hyperplane_{year}_{scenario}_{model}.parquet"))
# --- Principal execution block---
if __name__ == "__main__":
setup_environment()
dt = get_cmip6_datatree()
df_2024_g = load_dataframe("GFDL-ESM4", "ssp585", "2024-01", "2024-12")
df_2100_g = load_dataframe("GFDL-ESM4", "ssp585", "2100-01", "2100-12")
df_2024_h = load_hybrid("GFDL-ESM4", "ssp585", "2024")
df_2100_h = load_hybrid("GFDL-ESM4", "ssp585", "2100")
compute_g_critic(df_2024_g)
compute_g_critic(df_2100_g, year="2100")
df_2024_g = compute_hyperplane(df_2024_g)
df_2100_g = compute_hyperplane(df_2100_g)
#df_2024_g = pd.read_parquet("~/data/hyperplane_2024_ssp585_GFDL-ESM4.parquet")
#df_2100_g = pd.read_parquet("~/data/hyperplane_2100_ssp585_GFDL-ESM4.parquet")
data_merged(df_2024_g, df_2024_h)
data_merged(df_2100_g, df_2100_h, year="2100")