Syntax error when setting num_vertex 3

[wss153]

Hello, thank you for sharing this great project!

When I run the code, I repeatedly encounter a syntax error related to the line where I set num_vertex 3. The error message suggests a problem with a missing or extra comma. I have tried both adding and removing the comma, but the issue still persists.

Here is the exact error message:

reached 1
torch sparse
imported torch sparse

Traceback (most recent call last):
File "/home/dell/桌面/wss/APAP/outputs/apap-2d/test_script.py", line 25, in
from src.geometry.poisson_system import PoissonSystem
File "/home/dell/桌面/wss/APAP/src/geometry/poisson_system.py", line 28, in
from .PoissonSystem import SPLUSolveLayer, SparseMat
File "/home/dell/桌面/wss/APAP/src/geometry/PoissonSystem.py", line 147, in
class PoissonSystemMatrices:
File "/home/dell/桌面/wss/APAP/src/geometry/PoissonSystem.py", line 156, in PoissonSystemMatrices
def init(
File "/home/dell/miniconda3/envs/apap/lib/python3.9/site-packages/jaxtyping/_decorator.py", line 439, in jaxtyped
full_fn = _apply_typechecker(typechecker, full_fn)
File "/home/dell/miniconda3/envs/apap/lib/python3.9/site-packages/jaxtyping/_decorator.py", line 73, in _apply_typechecker
return typechecker(fn)
File "/home/dell/miniconda3/envs/apap/lib/python3.9/site-packages/typeguard/_decorators.py", line 230, in typechecked
retval = instrument(target)
File "/home/dell/miniconda3/envs/apap/lib/python3.9/site-packages/typeguard/_decorators.py", line 73, in instrument
instrumentor.visit(module_ast)
File "/home/dell/miniconda3/envs/apap/lib/python3.9/ast.py", line 409, in visit
return visitor(node)
File "/home/dell/miniconda3/envs/apap/lib/python3.9/site-packages/typeguard/_transformer.py", line 599, in visit_Module
self.generic_visit(node)
File "/home/dell/miniconda3/envs/apap/lib/python3.9/site-packages/typeguard/_transformer.py", line 499, in generic_visit
node = super().generic_visit(node)
File "/home/dell/miniconda3/envs/apap/lib/python3.9/ast.py", line 485, in generic_visit
value = self.visit(value)
File "/home/dell/miniconda3/envs/apap/lib/python3.9/ast.py", line 409, in visit
return visitor(node)
File "/home/dell/miniconda3/envs/apap/lib/python3.9/site-packages/typeguard/_transformer.py", line 644, in visit_ClassDef
self.generic_visit(node)
File "/home/dell/miniconda3/envs/apap/lib/python3.9/site-packages/typeguard/_transformer.py", line 499, in generic_visit
node = super().generic_visit(node)
File "/home/dell/miniconda3/envs/apap/lib/python3.9/ast.py", line 485, in generic_visit
value = self.visit(value)
File "/home/dell/miniconda3/envs/apap/lib/python3.9/ast.py", line 409, in visit
return visitor(node)
File "/home/dell/miniconda3/envs/apap/lib/python3.9/site-packages/typeguard/_transformer.py", line 722, in visit_FunctionDef
annotation = self._convert_annotation(deepcopy(arg.annotation))
File "/home/dell/miniconda3/envs/apap/lib/python3.9/site-packages/typeguard/_transformer.py", line 583, in _convert_annotation
new_annotation = cast(expr, AnnotationTransformer(self).visit(annotation))
File "/home/dell/miniconda3/envs/apap/lib/python3.9/site-packages/typeguard/_transformer.py", line 355, in visit
new_node = super().visit(node)
File "/home/dell/miniconda3/envs/apap/lib/python3.9/ast.py", line 409, in visit
return visitor(node)
File "/home/dell/miniconda3/envs/apap/lib/python3.9/site-packages/typeguard/_transformer.py", line 422, in visit_Subscript
[self.visit(item) for item in node.slice.elts],
File "/home/dell/miniconda3/envs/apap/lib/python3.9/site-packages/typeguard/_transformer.py", line 422, in
[self.visit(item) for item in node.slice.elts],
File "/home/dell/miniconda3/envs/apap/lib/python3.9/site-packages/typeguard/_transformer.py", line 355, in visit
new_node = super().visit(node)
File "/home/dell/miniconda3/envs/apap/lib/python3.9/ast.py", line 409, in visit
return visitor(node)
File "/home/dell/miniconda3/envs/apap/lib/python3.9/site-packages/typeguard/_transformer.py", line 475, in visit_Constant
expression = ast.parse(node.value, mode="eval")
File "/home/dell/miniconda3/envs/apap/lib/python3.9/ast.py", line 50, in parse
return compile(source, filename, mode, flags,
File "", line 1
num_vertex 3
^
SyntaxError: unexpected EOF while parsing

Could you please let me know if this is a bug in the code, or if I am making a mistake in how I should define num_vertex?

Thank you very much for your help!

[wss153]

Could you please also share the exact package versions you used ?
It would help me reproduce your environment more accurately. Thanks!

[DveloperY0115]

Dear wss153,

Thank you for your interest in our work!

The issue seems to stem from typeguard, which we use to check tensor types and shapes during runtime. Installing the following versions should resolve the error:

• typeguard==2.13.3
• tyro==0.7.3

In addition, I have pushed a conda environment configuration file extracted from my setup, which you can find here:
https://github.com/KAIST-Visual-AI-Group/APAP/blob/main/environment.yaml