I recently upgraded to Seurat 5 and I see that the previous command for reinstating PHATE in Seurat is not working.
This is not big issue, since I still can run phate with just phateR::phate but I do get a "very different" dimension reduction output than the one from Seurat::RunPhate even with the same parameters.
I recently upgraded to Seurat 5 and I see that the previous command for reinstating PHATE in Seurat is not working.
This is not big issue, since I still can run phate with just phateR::phate but I do get a "very different" dimension reduction output than the one from Seurat::RunPhate even with the same parameters.