diff --git a/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.add_auditory_real_statistics.rst b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.add_auditory_real_statistics.rst new file mode 100644 index 0000000..e922b0b --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.add_auditory_real_statistics.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.df\_transforms.add\_auditory\_real\_statistics +========================================================================== + +.. currentmodule:: lecilab_behavior_analysis.df_transforms + +.. autofunction:: add_auditory_real_statistics \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.add_day_column_to_df.rst b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.add_day_column_to_df.rst new file mode 100644 index 0000000..8e11adb --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.add_day_column_to_df.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.df\_transforms.add\_day\_column\_to\_df +=================================================================== + +.. currentmodule:: lecilab_behavior_analysis.df_transforms + +.. autofunction:: add_day_column_to_df \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.add_inter_trial_interval_column_to_df.rst b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.add_inter_trial_interval_column_to_df.rst new file mode 100644 index 0000000..bba693f --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.add_inter_trial_interval_column_to_df.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.df\_transforms.add\_inter\_trial\_interval\_column\_to\_df +====================================================================================== + +.. currentmodule:: lecilab_behavior_analysis.df_transforms + +.. autofunction:: add_inter_trial_interval_column_to_df \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.add_mouse_first_choice.rst b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.add_mouse_first_choice.rst new file mode 100644 index 0000000..0baf542 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.add_mouse_first_choice.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.df\_transforms.add\_mouse\_first\_choice +==================================================================== + +.. currentmodule:: lecilab_behavior_analysis.df_transforms + +.. autofunction:: add_mouse_first_choice \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.add_mouse_last_choice.rst b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.add_mouse_last_choice.rst new file mode 100644 index 0000000..99ecc92 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.add_mouse_last_choice.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.df\_transforms.add\_mouse\_last\_choice +=================================================================== + +.. currentmodule:: lecilab_behavior_analysis.df_transforms + +.. autofunction:: add_mouse_last_choice \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.add_port_where_animal_comes_from.rst b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.add_port_where_animal_comes_from.rst new file mode 100644 index 0000000..8acdb68 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.add_port_where_animal_comes_from.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.df\_transforms.add\_port\_where\_animal\_comes\_from +================================================================================ + +.. currentmodule:: lecilab_behavior_analysis.df_transforms + +.. autofunction:: add_port_where_animal_comes_from \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.add_trial_duration_column_to_df.rst b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.add_trial_duration_column_to_df.rst new file mode 100644 index 0000000..5420d7b --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.add_trial_duration_column_to_df.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.df\_transforms.add\_trial\_duration\_column\_to\_df +=============================================================================== + +.. currentmodule:: lecilab_behavior_analysis.df_transforms + +.. autofunction:: add_trial_duration_column_to_df \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.add_trial_misses.rst b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.add_trial_misses.rst new file mode 100644 index 0000000..e8e08d4 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.add_trial_misses.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.df\_transforms.add\_trial\_misses +============================================================= + +.. currentmodule:: lecilab_behavior_analysis.df_transforms + +.. autofunction:: add_trial_misses \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.add_trial_of_day_column_to_df.rst b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.add_trial_of_day_column_to_df.rst new file mode 100644 index 0000000..958cc7d --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.add_trial_of_day_column_to_df.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.df\_transforms.add\_trial\_of\_day\_column\_to\_df +============================================================================== + +.. currentmodule:: lecilab_behavior_analysis.df_transforms + +.. autofunction:: add_trial_of_day_column_to_df \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.add_visual_stimulus_difference.rst b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.add_visual_stimulus_difference.rst new file mode 100644 index 0000000..1a9fd83 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.add_visual_stimulus_difference.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.df\_transforms.add\_visual\_stimulus\_difference +============================================================================ + +.. currentmodule:: lecilab_behavior_analysis.df_transforms + +.. autofunction:: add_visual_stimulus_difference \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.analyze_df.rst b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.analyze_df.rst new file mode 100644 index 0000000..2ecd2d6 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.analyze_df.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.df\_transforms.analyze\_df +====================================================== + +.. currentmodule:: lecilab_behavior_analysis.df_transforms + +.. autofunction:: analyze_df \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.calculate_time_between_trials_and_reaction_time.rst b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.calculate_time_between_trials_and_reaction_time.rst new file mode 100644 index 0000000..33055d6 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.calculate_time_between_trials_and_reaction_time.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.df\_transforms.calculate\_time\_between\_trials\_and\_reaction\_time +================================================================================================ + +.. currentmodule:: lecilab_behavior_analysis.df_transforms + +.. autofunction:: calculate_time_between_trials_and_reaction_time \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.create_transition_matrix.rst b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.create_transition_matrix.rst new file mode 100644 index 0000000..3186964 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.create_transition_matrix.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.df\_transforms.create\_transition\_matrix +===================================================================== + +.. currentmodule:: lecilab_behavior_analysis.df_transforms + +.. autofunction:: create_transition_matrix \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.fill_missing_data.rst b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.fill_missing_data.rst new file mode 100644 index 0000000..c8670de --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.fill_missing_data.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.df\_transforms.fill\_missing\_data +============================================================== + +.. currentmodule:: lecilab_behavior_analysis.df_transforms + +.. autofunction:: fill_missing_data \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_bias_evolution_df.rst b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_bias_evolution_df.rst new file mode 100644 index 0000000..d404e6c --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_bias_evolution_df.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.df\_transforms.get\_bias\_evolution\_df +=================================================================== + +.. currentmodule:: lecilab_behavior_analysis.df_transforms + +.. autofunction:: get_bias_evolution_df \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_center_hold_df.rst b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_center_hold_df.rst new file mode 100644 index 0000000..475fa92 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_center_hold_df.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.df\_transforms.get\_center\_hold\_df +================================================================ + +.. currentmodule:: lecilab_behavior_analysis.df_transforms + +.. autofunction:: get_center_hold_df \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_choice_before.rst b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_choice_before.rst new file mode 100644 index 0000000..a52b2ee --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_choice_before.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.df\_transforms.get\_choice\_before +============================================================== + +.. currentmodule:: lecilab_behavior_analysis.df_transforms + +.. autofunction:: get_choice_before \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_daily_occupancy_percentages.rst b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_daily_occupancy_percentages.rst new file mode 100644 index 0000000..10e6e10 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_daily_occupancy_percentages.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.df\_transforms.get\_daily\_occupancy\_percentages +============================================================================= + +.. currentmodule:: lecilab_behavior_analysis.df_transforms + +.. autofunction:: get_daily_occupancy_percentages \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_dates_df.rst b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_dates_df.rst new file mode 100644 index 0000000..11f7cda --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_dates_df.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.df\_transforms.get\_dates\_df +========================================================= + +.. currentmodule:: lecilab_behavior_analysis.df_transforms + +.. autofunction:: get_dates_df \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_evidence_ratio.rst b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_evidence_ratio.rst new file mode 100644 index 0000000..02d19c2 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_evidence_ratio.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.df\_transforms.get\_evidence\_ratio +=============================================================== + +.. currentmodule:: lecilab_behavior_analysis.df_transforms + +.. autofunction:: get_evidence_ratio \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_left_auditory_stim.rst b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_left_auditory_stim.rst new file mode 100644 index 0000000..27d0800 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_left_auditory_stim.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.df\_transforms.get\_left\_auditory\_stim +==================================================================== + +.. currentmodule:: lecilab_behavior_analysis.df_transforms + +.. autofunction:: get_left_auditory_stim \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_left_choice.rst b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_left_choice.rst new file mode 100644 index 0000000..7af1f6a --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_left_choice.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.df\_transforms.get\_left\_choice +============================================================ + +.. currentmodule:: lecilab_behavior_analysis.df_transforms + +.. autofunction:: get_left_choice \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_occupancy_heatmap.rst b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_occupancy_heatmap.rst new file mode 100644 index 0000000..cde6639 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_occupancy_heatmap.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.df\_transforms.get\_occupancy\_heatmap +================================================================== + +.. currentmodule:: lecilab_behavior_analysis.df_transforms + +.. autofunction:: get_occupancy_heatmap \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_occupancy_matrix.rst b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_occupancy_matrix.rst new file mode 100644 index 0000000..58231c4 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_occupancy_matrix.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.df\_transforms.get\_occupancy\_matrix +================================================================= + +.. currentmodule:: lecilab_behavior_analysis.df_transforms + +.. autofunction:: get_occupancy_matrix \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_performance_by_decision_df.rst b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_performance_by_decision_df.rst new file mode 100644 index 0000000..aaba607 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_performance_by_decision_df.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.df\_transforms.get\_performance\_by\_decision\_df +============================================================================= + +.. currentmodule:: lecilab_behavior_analysis.df_transforms + +.. autofunction:: get_performance_by_decision_df \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_performance_by_difficulty.rst b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_performance_by_difficulty.rst new file mode 100644 index 0000000..1951e0d --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_performance_by_difficulty.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.df\_transforms.get\_performance\_by\_difficulty +=========================================================================== + +.. currentmodule:: lecilab_behavior_analysis.df_transforms + +.. autofunction:: get_performance_by_difficulty \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_performance_by_difficulty_diff.rst b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_performance_by_difficulty_diff.rst new file mode 100644 index 0000000..fb87e42 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_performance_by_difficulty_diff.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.df\_transforms.get\_performance\_by\_difficulty\_diff +================================================================================= + +.. currentmodule:: lecilab_behavior_analysis.df_transforms + +.. autofunction:: get_performance_by_difficulty_diff \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_performance_by_difficulty_ratio.rst b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_performance_by_difficulty_ratio.rst new file mode 100644 index 0000000..8e138e0 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_performance_by_difficulty_ratio.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.df\_transforms.get\_performance\_by\_difficulty\_ratio +================================================================================== + +.. currentmodule:: lecilab_behavior_analysis.df_transforms + +.. autofunction:: get_performance_by_difficulty_ratio \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_performance_through_trials.rst b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_performance_through_trials.rst new file mode 100644 index 0000000..2ce13c6 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_performance_through_trials.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.df\_transforms.get\_performance\_through\_trials +============================================================================ + +.. currentmodule:: lecilab_behavior_analysis.df_transforms + +.. autofunction:: get_performance_through_trials \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_reaction_times_by_date_df.rst b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_reaction_times_by_date_df.rst new file mode 100644 index 0000000..6346418 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_reaction_times_by_date_df.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.df\_transforms.get\_reaction\_times\_by\_date\_df +============================================================================= + +.. currentmodule:: lecilab_behavior_analysis.df_transforms + +.. autofunction:: get_reaction_times_by_date_df \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_repeat_or_alternate_performance.rst b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_repeat_or_alternate_performance.rst new file mode 100644 index 0000000..65618df --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_repeat_or_alternate_performance.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.df\_transforms.get\_repeat\_or\_alternate\_performance +================================================================================== + +.. currentmodule:: lecilab_behavior_analysis.df_transforms + +.. autofunction:: get_repeat_or_alternate_performance \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_repeat_or_alternate_series.rst b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_repeat_or_alternate_series.rst new file mode 100644 index 0000000..4f704a0 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_repeat_or_alternate_series.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.df\_transforms.get\_repeat\_or\_alternate\_series +============================================================================= + +.. currentmodule:: lecilab_behavior_analysis.df_transforms + +.. autofunction:: get_repeat_or_alternate_series \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_start_and_end_of_sessions_df.rst b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_start_and_end_of_sessions_df.rst new file mode 100644 index 0000000..8ce86d2 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_start_and_end_of_sessions_df.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.df\_transforms.get\_start\_and\_end\_of\_sessions\_df +================================================================================= + +.. currentmodule:: lecilab_behavior_analysis.df_transforms + +.. autofunction:: get_start_and_end_of_sessions_df \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_time_kernel_impact.rst b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_time_kernel_impact.rst new file mode 100644 index 0000000..0fbf77a --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_time_kernel_impact.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.df\_transforms.get\_time\_kernel\_impact +==================================================================== + +.. currentmodule:: lecilab_behavior_analysis.df_transforms + +.. autofunction:: get_time_kernel_impact \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_training_summary_matrix.rst b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_training_summary_matrix.rst new file mode 100644 index 0000000..7971790 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_training_summary_matrix.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.df\_transforms.get\_training\_summary\_matrix +========================================================================= + +.. currentmodule:: lecilab_behavior_analysis.df_transforms + +.. autofunction:: get_training_summary_matrix \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_triangle_polar_plot_df.rst b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_triangle_polar_plot_df.rst new file mode 100644 index 0000000..1f29066 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_triangle_polar_plot_df.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.df\_transforms.get\_triangle\_polar\_plot\_df +========================================================================= + +.. currentmodule:: lecilab_behavior_analysis.df_transforms + +.. autofunction:: get_triangle_polar_plot_df \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_water_df.rst b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_water_df.rst new file mode 100644 index 0000000..2a07a7c --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.get_water_df.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.df\_transforms.get\_water\_df +========================================================= + +.. currentmodule:: lecilab_behavior_analysis.df_transforms + +.. autofunction:: get_water_df \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.parameters_for_fit.rst b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.parameters_for_fit.rst new file mode 100644 index 0000000..db4ab00 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.parameters_for_fit.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.df\_transforms.parameters\_for\_fit +=============================================================== + +.. currentmodule:: lecilab_behavior_analysis.df_transforms + +.. autofunction:: parameters_for_fit \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.points_to_lines_for_bias_evolution.rst b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.points_to_lines_for_bias_evolution.rst new file mode 100644 index 0000000..d8d8b01 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.points_to_lines_for_bias_evolution.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.df\_transforms.points\_to\_lines\_for\_bias\_evolution +================================================================================== + +.. currentmodule:: lecilab_behavior_analysis.df_transforms + +.. autofunction:: points_to_lines_for_bias_evolution \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.reformat_df_columns.rst b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.reformat_df_columns.rst new file mode 100644 index 0000000..db2a92d --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.reformat_df_columns.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.df\_transforms.reformat\_df\_columns +================================================================ + +.. currentmodule:: lecilab_behavior_analysis.df_transforms + +.. autofunction:: reformat_df_columns \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.repeat_or_alternate_series_comparison.rst b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.repeat_or_alternate_series_comparison.rst new file mode 100644 index 0000000..feef777 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.repeat_or_alternate_series_comparison.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.df\_transforms.repeat\_or\_alternate\_series\_comparison +==================================================================================== + +.. currentmodule:: lecilab_behavior_analysis.df_transforms + +.. autofunction:: repeat_or_alternate_series_comparison \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.side_and_difficulty_to_numeric.rst b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.side_and_difficulty_to_numeric.rst new file mode 100644 index 0000000..52799db --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.df_transforms.side_and_difficulty_to_numeric.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.df\_transforms.side\_and\_difficulty\_to\_numeric +============================================================================= + +.. currentmodule:: lecilab_behavior_analysis.df_transforms + +.. autofunction:: side_and_difficulty_to_numeric \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.figure_maker.session_summary_figure.rst b/docs/source/api_generated/lecilab_behavior_analysis.figure_maker.session_summary_figure.rst new file mode 100644 index 0000000..85858dc --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.figure_maker.session_summary_figure.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.figure\_maker.session\_summary\_figure +================================================================== + +.. currentmodule:: lecilab_behavior_analysis.figure_maker + +.. autofunction:: session_summary_figure \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.figure_maker.subject_progress_figure.rst b/docs/source/api_generated/lecilab_behavior_analysis.figure_maker.subject_progress_figure.rst new file mode 100644 index 0000000..b211eb9 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.figure_maker.subject_progress_figure.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.figure\_maker.subject\_progress\_figure +=================================================================== + +.. currentmodule:: lecilab_behavior_analysis.figure_maker + +.. autofunction:: subject_progress_figure \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.generate_fake_dataset.generate_fake_dataset.rst b/docs/source/api_generated/lecilab_behavior_analysis.generate_fake_dataset.generate_fake_dataset.rst new file mode 100644 index 0000000..e625c91 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.generate_fake_dataset.generate_fake_dataset.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.generate\_fake\_dataset.generate\_fake\_dataset +=========================================================================== + +.. currentmodule:: lecilab_behavior_analysis.generate_fake_dataset + +.. autofunction:: generate_fake_dataset \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.plots.bias_vs_trials_plot.rst b/docs/source/api_generated/lecilab_behavior_analysis.plots.bias_vs_trials_plot.rst new file mode 100644 index 0000000..3a53835 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.plots.bias_vs_trials_plot.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.plots.bias\_vs\_trials\_plot +======================================================== + +.. currentmodule:: lecilab_behavior_analysis.plots + +.. autofunction:: bias_vs_trials_plot \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.plots.correct_left_and_right_plot.rst b/docs/source/api_generated/lecilab_behavior_analysis.plots.correct_left_and_right_plot.rst new file mode 100644 index 0000000..ab2f408 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.plots.correct_left_and_right_plot.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.plots.correct\_left\_and\_right\_plot +================================================================= + +.. currentmodule:: lecilab_behavior_analysis.plots + +.. autofunction:: correct_left_and_right_plot \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.plots.correct_left_and_right_plot_multisensory.rst b/docs/source/api_generated/lecilab_behavior_analysis.plots.correct_left_and_right_plot_multisensory.rst new file mode 100644 index 0000000..b2c38ef --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.plots.correct_left_and_right_plot_multisensory.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.plots.correct\_left\_and\_right\_plot\_multisensory +=============================================================================== + +.. currentmodule:: lecilab_behavior_analysis.plots + +.. autofunction:: correct_left_and_right_plot_multisensory \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.plots.number_of_correct_responses_plot.rst b/docs/source/api_generated/lecilab_behavior_analysis.plots.number_of_correct_responses_plot.rst new file mode 100644 index 0000000..bf028d6 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.plots.number_of_correct_responses_plot.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.plots.number\_of\_correct\_responses\_plot +====================================================================== + +.. currentmodule:: lecilab_behavior_analysis.plots + +.. autofunction:: number_of_correct_responses_plot \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.plots.performance_by_decision_plot.rst b/docs/source/api_generated/lecilab_behavior_analysis.plots.performance_by_decision_plot.rst new file mode 100644 index 0000000..94f090c --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.plots.performance_by_decision_plot.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.plots.performance\_by\_decision\_plot +================================================================= + +.. currentmodule:: lecilab_behavior_analysis.plots + +.. autofunction:: performance_by_decision_plot \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.plots.performance_vs_trials_plot.rst b/docs/source/api_generated/lecilab_behavior_analysis.plots.performance_vs_trials_plot.rst new file mode 100644 index 0000000..b9f542d --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.plots.performance_vs_trials_plot.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.plots.performance\_vs\_trials\_plot +=============================================================== + +.. currentmodule:: lecilab_behavior_analysis.plots + +.. autofunction:: performance_vs_trials_plot \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.plots.plot_decision_evolution_triangle.rst b/docs/source/api_generated/lecilab_behavior_analysis.plots.plot_decision_evolution_triangle.rst new file mode 100644 index 0000000..ae7b9ba --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.plots.plot_decision_evolution_triangle.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.plots.plot\_decision\_evolution\_triangle +===================================================================== + +.. currentmodule:: lecilab_behavior_analysis.plots + +.. autofunction:: plot_decision_evolution_triangle \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.plots.plot_filter_model_variables.rst b/docs/source/api_generated/lecilab_behavior_analysis.plots.plot_filter_model_variables.rst new file mode 100644 index 0000000..58b0f7e --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.plots.plot_filter_model_variables.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.plots.plot\_filter\_model\_variables +================================================================ + +.. currentmodule:: lecilab_behavior_analysis.plots + +.. autofunction:: plot_filter_model_variables \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.plots.plot_mean_and_cis_by_date.rst b/docs/source/api_generated/lecilab_behavior_analysis.plots.plot_mean_and_cis_by_date.rst new file mode 100644 index 0000000..fbc113e --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.plots.plot_mean_and_cis_by_date.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.plots.plot\_mean\_and\_cis\_by\_date +================================================================ + +.. currentmodule:: lecilab_behavior_analysis.plots + +.. autofunction:: plot_mean_and_cis_by_date \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.plots.plot_number_of_pokes_histogram.rst b/docs/source/api_generated/lecilab_behavior_analysis.plots.plot_number_of_pokes_histogram.rst new file mode 100644 index 0000000..ad261f0 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.plots.plot_number_of_pokes_histogram.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.plots.plot\_number\_of\_pokes\_histogram +==================================================================== + +.. currentmodule:: lecilab_behavior_analysis.plots + +.. autofunction:: plot_number_of_pokes_histogram \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.plots.plot_percentage_of_occupancy_per_day.rst b/docs/source/api_generated/lecilab_behavior_analysis.plots.plot_percentage_of_occupancy_per_day.rst new file mode 100644 index 0000000..cae9ffa --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.plots.plot_percentage_of_occupancy_per_day.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.plots.plot\_percentage\_of\_occupancy\_per\_day +=========================================================================== + +.. currentmodule:: lecilab_behavior_analysis.plots + +.. autofunction:: plot_percentage_of_occupancy_per_day \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.plots.plot_port_holding_time_histogram.rst b/docs/source/api_generated/lecilab_behavior_analysis.plots.plot_port_holding_time_histogram.rst new file mode 100644 index 0000000..36bb3a0 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.plots.plot_port_holding_time_histogram.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.plots.plot\_port\_holding\_time\_histogram +====================================================================== + +.. currentmodule:: lecilab_behavior_analysis.plots + +.. autofunction:: plot_port_holding_time_histogram \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.plots.plot_table_from_df.rst b/docs/source/api_generated/lecilab_behavior_analysis.plots.plot_table_from_df.rst new file mode 100644 index 0000000..1c214dd --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.plots.plot_table_from_df.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.plots.plot\_table\_from\_df +======================================================= + +.. currentmodule:: lecilab_behavior_analysis.plots + +.. autofunction:: plot_table_from_df \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.plots.plot_time_between_trials_and_reaction_time.rst b/docs/source/api_generated/lecilab_behavior_analysis.plots.plot_time_between_trials_and_reaction_time.rst new file mode 100644 index 0000000..aeb97fc --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.plots.plot_time_between_trials_and_reaction_time.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.plots.plot\_time\_between\_trials\_and\_reaction\_time +================================================================================== + +.. currentmodule:: lecilab_behavior_analysis.plots + +.. autofunction:: plot_time_between_trials_and_reaction_time \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.plots.plot_training_times_clock_heatmap.rst b/docs/source/api_generated/lecilab_behavior_analysis.plots.plot_training_times_clock_heatmap.rst new file mode 100644 index 0000000..0e8737c --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.plots.plot_training_times_clock_heatmap.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.plots.plot\_training\_times\_clock\_heatmap +======================================================================= + +.. currentmodule:: lecilab_behavior_analysis.plots + +.. autofunction:: plot_training_times_clock_heatmap \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.plots.plot_training_times_heatmap.rst b/docs/source/api_generated/lecilab_behavior_analysis.plots.plot_training_times_heatmap.rst new file mode 100644 index 0000000..9857b66 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.plots.plot_training_times_heatmap.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.plots.plot\_training\_times\_heatmap +================================================================ + +.. currentmodule:: lecilab_behavior_analysis.plots + +.. autofunction:: plot_training_times_heatmap \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.plots.plot_transition_matrix.rst b/docs/source/api_generated/lecilab_behavior_analysis.plots.plot_transition_matrix.rst new file mode 100644 index 0000000..513714e --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.plots.plot_transition_matrix.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.plots.plot\_transition\_matrix +========================================================== + +.. currentmodule:: lecilab_behavior_analysis.plots + +.. autofunction:: plot_transition_matrix \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.plots.plot_transition_network_with_curved_edges.rst b/docs/source/api_generated/lecilab_behavior_analysis.plots.plot_transition_network_with_curved_edges.rst new file mode 100644 index 0000000..259ac69 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.plots.plot_transition_network_with_curved_edges.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.plots.plot\_transition\_network\_with\_curved\_edges +================================================================================ + +.. currentmodule:: lecilab_behavior_analysis.plots + +.. autofunction:: plot_transition_network_with_curved_edges \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.plots.psychometric_plot.rst b/docs/source/api_generated/lecilab_behavior_analysis.plots.psychometric_plot.rst new file mode 100644 index 0000000..36207d7 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.plots.psychometric_plot.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.plots.psychometric\_plot +==================================================== + +.. currentmodule:: lecilab_behavior_analysis.plots + +.. autofunction:: psychometric_plot \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.plots.rasterize_plot.rst b/docs/source/api_generated/lecilab_behavior_analysis.plots.rasterize_plot.rst new file mode 100644 index 0000000..4d7e8a8 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.plots.rasterize_plot.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.plots.rasterize\_plot +================================================= + +.. currentmodule:: lecilab_behavior_analysis.plots + +.. autofunction:: rasterize_plot \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.plots.repeat_or_alternate_performance_plot.rst b/docs/source/api_generated/lecilab_behavior_analysis.plots.repeat_or_alternate_performance_plot.rst new file mode 100644 index 0000000..493076d --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.plots.repeat_or_alternate_performance_plot.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.plots.repeat\_or\_alternate\_performance\_plot +========================================================================== + +.. currentmodule:: lecilab_behavior_analysis.plots + +.. autofunction:: repeat_or_alternate_performance_plot \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.plots.side_correct_performance_plot.rst b/docs/source/api_generated/lecilab_behavior_analysis.plots.side_correct_performance_plot.rst new file mode 100644 index 0000000..2e8421c --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.plots.side_correct_performance_plot.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.plots.side\_correct\_performance\_plot +================================================================== + +.. currentmodule:: lecilab_behavior_analysis.plots + +.. autofunction:: side_correct_performance_plot \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.plots.summary_matrix_plot.rst b/docs/source/api_generated/lecilab_behavior_analysis.plots.summary_matrix_plot.rst new file mode 100644 index 0000000..92ec8ca --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.plots.summary_matrix_plot.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.plots.summary\_matrix\_plot +======================================================= + +.. currentmodule:: lecilab_behavior_analysis.plots + +.. autofunction:: summary_matrix_plot \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.plots.summary_text_plot.rst b/docs/source/api_generated/lecilab_behavior_analysis.plots.summary_text_plot.rst new file mode 100644 index 0000000..a4078a9 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.plots.summary_text_plot.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.plots.summary\_text\_plot +===================================================== + +.. currentmodule:: lecilab_behavior_analysis.plots + +.. autofunction:: summary_text_plot \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.plots.training_calendar_plot.rst b/docs/source/api_generated/lecilab_behavior_analysis.plots.training_calendar_plot.rst new file mode 100644 index 0000000..14f78d7 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.plots.training_calendar_plot.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.plots.training\_calendar\_plot +========================================================== + +.. currentmodule:: lecilab_behavior_analysis.plots + +.. autofunction:: training_calendar_plot \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.plots.trials_by_day_plot.rst b/docs/source/api_generated/lecilab_behavior_analysis.plots.trials_by_day_plot.rst new file mode 100644 index 0000000..dbf7dd1 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.plots.trials_by_day_plot.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.plots.trials\_by\_day\_plot +======================================================= + +.. currentmodule:: lecilab_behavior_analysis.plots + +.. autofunction:: trials_by_day_plot \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.plots.trials_by_session_hist.rst b/docs/source/api_generated/lecilab_behavior_analysis.plots.trials_by_session_hist.rst new file mode 100644 index 0000000..8a8ad86 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.plots.trials_by_session_hist.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.plots.trials\_by\_session\_hist +=========================================================== + +.. currentmodule:: lecilab_behavior_analysis.plots + +.. autofunction:: trials_by_session_hist \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.plots.trials_by_session_plot.rst b/docs/source/api_generated/lecilab_behavior_analysis.plots.trials_by_session_plot.rst new file mode 100644 index 0000000..9800d9e --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.plots.trials_by_session_plot.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.plots.trials\_by\_session\_plot +=========================================================== + +.. currentmodule:: lecilab_behavior_analysis.plots + +.. autofunction:: trials_by_session_plot \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.plots.triangle_polar_plot.rst b/docs/source/api_generated/lecilab_behavior_analysis.plots.triangle_polar_plot.rst new file mode 100644 index 0000000..f19596c --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.plots.triangle_polar_plot.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.plots.triangle\_polar\_plot +======================================================= + +.. currentmodule:: lecilab_behavior_analysis.plots + +.. autofunction:: triangle_polar_plot \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.plots.water_by_date_plot.rst b/docs/source/api_generated/lecilab_behavior_analysis.plots.water_by_date_plot.rst new file mode 100644 index 0000000..b25c380 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.plots.water_by_date_plot.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.plots.water\_by\_date\_plot +======================================================= + +.. currentmodule:: lecilab_behavior_analysis.plots + +.. autofunction:: water_by_date_plot \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.utils.analyze_sound_matrix.rst b/docs/source/api_generated/lecilab_behavior_analysis.utils.analyze_sound_matrix.rst new file mode 100644 index 0000000..164ed50 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.utils.analyze_sound_matrix.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.utils.analyze\_sound\_matrix +======================================================== + +.. currentmodule:: lecilab_behavior_analysis.utils + +.. autofunction:: analyze_sound_matrix \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.utils.column_checker.rst b/docs/source/api_generated/lecilab_behavior_analysis.utils.column_checker.rst new file mode 100644 index 0000000..30304ab --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.utils.column_checker.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.utils.column\_checker +================================================= + +.. currentmodule:: lecilab_behavior_analysis.utils + +.. autofunction:: column_checker \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.utils.filter_variables_for_model.rst b/docs/source/api_generated/lecilab_behavior_analysis.utils.filter_variables_for_model.rst new file mode 100644 index 0000000..cb322f6 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.utils.filter_variables_for_model.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.utils.filter\_variables\_for\_model +=============================================================== + +.. currentmodule:: lecilab_behavior_analysis.utils + +.. autofunction:: filter_variables_for_model \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.utils.find_next_end_task_time_in_events.rst b/docs/source/api_generated/lecilab_behavior_analysis.utils.find_next_end_task_time_in_events.rst new file mode 100644 index 0000000..6966cfa --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.utils.find_next_end_task_time_in_events.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.utils.find\_next\_end\_task\_time\_in\_events +========================================================================= + +.. currentmodule:: lecilab_behavior_analysis.utils + +.. autofunction:: find_next_end_task_time_in_events \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.utils.first_poke_after_stimulus_state.rst b/docs/source/api_generated/lecilab_behavior_analysis.utils.first_poke_after_stimulus_state.rst new file mode 100644 index 0000000..f818158 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.utils.first_poke_after_stimulus_state.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.utils.first\_poke\_after\_stimulus\_state +===================================================================== + +.. currentmodule:: lecilab_behavior_analysis.utils + +.. autofunction:: first_poke_after_stimulus_state \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.utils.fit_lapse_logistic_independent.rst b/docs/source/api_generated/lecilab_behavior_analysis.utils.fit_lapse_logistic_independent.rst new file mode 100644 index 0000000..2ba02ce --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.utils.fit_lapse_logistic_independent.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.utils.fit\_lapse\_logistic\_independent +=================================================================== + +.. currentmodule:: lecilab_behavior_analysis.utils + +.. autofunction:: fit_lapse_logistic_independent \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.utils.generate_tv_report.rst b/docs/source/api_generated/lecilab_behavior_analysis.utils.generate_tv_report.rst new file mode 100644 index 0000000..fe70097 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.utils.generate_tv_report.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.utils.generate\_tv\_report +====================================================== + +.. currentmodule:: lecilab_behavior_analysis.utils + +.. autofunction:: generate_tv_report \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.utils.get_animals_in_project.rst b/docs/source/api_generated/lecilab_behavior_analysis.utils.get_animals_in_project.rst new file mode 100644 index 0000000..8bbe78d --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.utils.get_animals_in_project.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.utils.get\_animals\_in\_project +=========================================================== + +.. currentmodule:: lecilab_behavior_analysis.utils + +.. autofunction:: get_animals_in_project \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.utils.get_block_size_truncexp_mean30.rst b/docs/source/api_generated/lecilab_behavior_analysis.utils.get_block_size_truncexp_mean30.rst new file mode 100644 index 0000000..23b369e --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.utils.get_block_size_truncexp_mean30.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.utils.get\_block\_size\_truncexp\_mean30 +==================================================================== + +.. currentmodule:: lecilab_behavior_analysis.utils + +.. autofunction:: get_block_size_truncexp_mean30 \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.utils.get_block_size_uniform_pm30.rst b/docs/source/api_generated/lecilab_behavior_analysis.utils.get_block_size_uniform_pm30.rst new file mode 100644 index 0000000..6d722d1 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.utils.get_block_size_uniform_pm30.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.utils.get\_block\_size\_uniform\_pm30 +================================================================= + +.. currentmodule:: lecilab_behavior_analysis.utils + +.. autofunction:: get_block_size_uniform_pm30 \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.utils.get_day_number_of_trials.rst b/docs/source/api_generated/lecilab_behavior_analysis.utils.get_day_number_of_trials.rst new file mode 100644 index 0000000..afc7dc3 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.utils.get_day_number_of_trials.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.utils.get\_day\_number\_of\_trials +============================================================== + +.. currentmodule:: lecilab_behavior_analysis.utils + +.. autofunction:: get_day_number_of_trials \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.utils.get_day_performance.rst b/docs/source/api_generated/lecilab_behavior_analysis.utils.get_day_performance.rst new file mode 100644 index 0000000..a901ba1 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.utils.get_day_performance.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.utils.get\_day\_performance +======================================================= + +.. currentmodule:: lecilab_behavior_analysis.utils + +.. autofunction:: get_day_performance \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.utils.get_dictionary_event_as_list.rst b/docs/source/api_generated/lecilab_behavior_analysis.utils.get_dictionary_event_as_list.rst new file mode 100644 index 0000000..3c63151 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.utils.get_dictionary_event_as_list.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.utils.get\_dictionary\_event\_as\_list +================================================================== + +.. currentmodule:: lecilab_behavior_analysis.utils + +.. autofunction:: get_dictionary_event_as_list \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.utils.get_folders_from_server.rst b/docs/source/api_generated/lecilab_behavior_analysis.utils.get_folders_from_server.rst new file mode 100644 index 0000000..deb1769 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.utils.get_folders_from_server.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.utils.get\_folders\_from\_server +============================================================ + +.. currentmodule:: lecilab_behavior_analysis.utils + +.. autofunction:: get_folders_from_server \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.utils.get_idibaps_cluster_credentials.rst b/docs/source/api_generated/lecilab_behavior_analysis.utils.get_idibaps_cluster_credentials.rst new file mode 100644 index 0000000..6c5944d --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.utils.get_idibaps_cluster_credentials.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.utils.get\_idibaps\_cluster\_credentials +==================================================================== + +.. currentmodule:: lecilab_behavior_analysis.utils + +.. autofunction:: get_idibaps_cluster_credentials \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.utils.get_last_poke_before_stimulus_state.rst b/docs/source/api_generated/lecilab_behavior_analysis.utils.get_last_poke_before_stimulus_state.rst new file mode 100644 index 0000000..39b1c6c --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.utils.get_last_poke_before_stimulus_state.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.utils.get\_last\_poke\_before\_stimulus\_state +========================================================================== + +.. currentmodule:: lecilab_behavior_analysis.utils + +.. autofunction:: get_last_poke_before_stimulus_state \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.utils.get_last_poke_of_trial.rst b/docs/source/api_generated/lecilab_behavior_analysis.utils.get_last_poke_of_trial.rst new file mode 100644 index 0000000..c9a46fb --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.utils.get_last_poke_of_trial.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.utils.get\_last\_poke\_of\_trial +============================================================ + +.. currentmodule:: lecilab_behavior_analysis.utils + +.. autofunction:: get_last_poke_of_trial \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.utils.get_outpath.rst b/docs/source/api_generated/lecilab_behavior_analysis.utils.get_outpath.rst new file mode 100644 index 0000000..a12df43 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.utils.get_outpath.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.utils.get\_outpath +============================================== + +.. currentmodule:: lecilab_behavior_analysis.utils + +.. autofunction:: get_outpath \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.utils.get_repeat_or_alternate_to_numeric.rst b/docs/source/api_generated/lecilab_behavior_analysis.utils.get_repeat_or_alternate_to_numeric.rst new file mode 100644 index 0000000..a946a75 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.utils.get_repeat_or_alternate_to_numeric.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.utils.get\_repeat\_or\_alternate\_to\_numeric +========================================================================= + +.. currentmodule:: lecilab_behavior_analysis.utils + +.. autofunction:: get_repeat_or_alternate_to_numeric \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.utils.get_right_bias.rst b/docs/source/api_generated/lecilab_behavior_analysis.utils.get_right_bias.rst new file mode 100644 index 0000000..16b8ff7 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.utils.get_right_bias.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.utils.get\_right\_bias +================================================== + +.. currentmodule:: lecilab_behavior_analysis.utils + +.. autofunction:: get_right_bias \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.utils.get_server_projects.rst b/docs/source/api_generated/lecilab_behavior_analysis.utils.get_server_projects.rst new file mode 100644 index 0000000..aff7973 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.utils.get_server_projects.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.utils.get\_server\_projects +======================================================= + +.. currentmodule:: lecilab_behavior_analysis.utils + +.. autofunction:: get_server_projects \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.utils.get_session_box_usage.rst b/docs/source/api_generated/lecilab_behavior_analysis.utils.get_session_box_usage.rst new file mode 100644 index 0000000..7e8281f --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.utils.get_session_box_usage.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.utils.get\_session\_box\_usage +========================================================== + +.. currentmodule:: lecilab_behavior_analysis.utils + +.. autofunction:: get_session_box_usage \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.utils.get_session_number_of_trials.rst b/docs/source/api_generated/lecilab_behavior_analysis.utils.get_session_number_of_trials.rst new file mode 100644 index 0000000..b2fc020 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.utils.get_session_number_of_trials.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.utils.get\_session\_number\_of\_trials +================================================================== + +.. currentmodule:: lecilab_behavior_analysis.utils + +.. autofunction:: get_session_number_of_trials \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.utils.get_session_performance.rst b/docs/source/api_generated/lecilab_behavior_analysis.utils.get_session_performance.rst new file mode 100644 index 0000000..f55bcfa --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.utils.get_session_performance.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.utils.get\_session\_performance +=========================================================== + +.. currentmodule:: lecilab_behavior_analysis.utils + +.. autofunction:: get_session_performance \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.utils.get_sound_stats.rst b/docs/source/api_generated/lecilab_behavior_analysis.utils.get_sound_stats.rst new file mode 100644 index 0000000..e25c1c4 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.utils.get_sound_stats.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.utils.get\_sound\_stats +=================================================== + +.. currentmodule:: lecilab_behavior_analysis.utils + +.. autofunction:: get_sound_stats \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.utils.get_start_and_end_times.rst b/docs/source/api_generated/lecilab_behavior_analysis.utils.get_start_and_end_times.rst new file mode 100644 index 0000000..17df3b8 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.utils.get_start_and_end_times.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.utils.get\_start\_and\_end\_times +============================================================= + +.. currentmodule:: lecilab_behavior_analysis.utils + +.. autofunction:: get_start_and_end_times \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.utils.get_text_from_subject_df.rst b/docs/source/api_generated/lecilab_behavior_analysis.utils.get_text_from_subject_df.rst new file mode 100644 index 0000000..eed674f --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.utils.get_text_from_subject_df.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.utils.get\_text\_from\_subject\_df +============================================================== + +.. currentmodule:: lecilab_behavior_analysis.utils + +.. autofunction:: get_text_from_subject_df \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.utils.get_text_from_subset_df.rst b/docs/source/api_generated/lecilab_behavior_analysis.utils.get_text_from_subset_df.rst new file mode 100644 index 0000000..1746e4a --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.utils.get_text_from_subset_df.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.utils.get\_text\_from\_subset\_df +============================================================= + +.. currentmodule:: lecilab_behavior_analysis.utils + +.. autofunction:: get_text_from_subset_df \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.utils.get_trial_port_hold.rst b/docs/source/api_generated/lecilab_behavior_analysis.utils.get_trial_port_hold.rst new file mode 100644 index 0000000..047d74f --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.utils.get_trial_port_hold.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.utils.get\_trial\_port\_hold +======================================================== + +.. currentmodule:: lecilab_behavior_analysis.utils + +.. autofunction:: get_trial_port_hold \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.utils.hierarchical_partitioning.rst b/docs/source/api_generated/lecilab_behavior_analysis.utils.hierarchical_partitioning.rst new file mode 100644 index 0000000..6b54063 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.utils.hierarchical_partitioning.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.utils.hierarchical\_partitioning +============================================================ + +.. currentmodule:: lecilab_behavior_analysis.utils + +.. autofunction:: hierarchical_partitioning \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.utils.is_this_a_miss_trial.rst b/docs/source/api_generated/lecilab_behavior_analysis.utils.is_this_a_miss_trial.rst new file mode 100644 index 0000000..80e7a41 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.utils.is_this_a_miss_trial.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.utils.is\_this\_a\_miss\_trial +========================================================== + +.. currentmodule:: lecilab_behavior_analysis.utils + +.. autofunction:: is_this_a_miss_trial \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.utils.lapse_logistic_independent.rst b/docs/source/api_generated/lecilab_behavior_analysis.utils.lapse_logistic_independent.rst new file mode 100644 index 0000000..49b5fe8 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.utils.lapse_logistic_independent.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.utils.lapse\_logistic\_independent +============================================================== + +.. currentmodule:: lecilab_behavior_analysis.utils + +.. autofunction:: lapse_logistic_independent \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.utils.list_to_colors.rst b/docs/source/api_generated/lecilab_behavior_analysis.utils.list_to_colors.rst new file mode 100644 index 0000000..cf5b43f --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.utils.list_to_colors.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.utils.list\_to\_colors +================================================== + +.. currentmodule:: lecilab_behavior_analysis.utils + +.. autofunction:: list_to_colors \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.utils.load_all_events.rst b/docs/source/api_generated/lecilab_behavior_analysis.utils.load_all_events.rst new file mode 100644 index 0000000..0463815 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.utils.load_all_events.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.utils.load\_all\_events +=================================================== + +.. currentmodule:: lecilab_behavior_analysis.utils + +.. autofunction:: load_all_events \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.utils.load_example_data.rst b/docs/source/api_generated/lecilab_behavior_analysis.utils.load_example_data.rst new file mode 100644 index 0000000..19409aa --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.utils.load_example_data.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.utils.load\_example\_data +===================================================== + +.. currentmodule:: lecilab_behavior_analysis.utils + +.. autofunction:: load_example_data \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.utils.logi_model_fit.rst b/docs/source/api_generated/lecilab_behavior_analysis.utils.logi_model_fit.rst new file mode 100644 index 0000000..307fb17 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.utils.logi_model_fit.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.utils.logi\_model\_fit +================================================== + +.. currentmodule:: lecilab_behavior_analysis.utils + +.. autofunction:: logi_model_fit \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.utils.logi_model_fit_input.rst b/docs/source/api_generated/lecilab_behavior_analysis.utils.logi_model_fit_input.rst new file mode 100644 index 0000000..bf6a200 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.utils.logi_model_fit_input.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.utils.logi\_model\_fit\_input +========================================================= + +.. currentmodule:: lecilab_behavior_analysis.utils + +.. autofunction:: logi_model_fit_input \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.utils.previous_impact_on_time_kernel.rst b/docs/source/api_generated/lecilab_behavior_analysis.utils.previous_impact_on_time_kernel.rst new file mode 100644 index 0000000..7b2fa80 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.utils.previous_impact_on_time_kernel.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.utils.previous\_impact\_on\_time\_kernel +==================================================================== + +.. currentmodule:: lecilab_behavior_analysis.utils + +.. autofunction:: previous_impact_on_time_kernel \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.utils.rsync_cluster_data.rst b/docs/source/api_generated/lecilab_behavior_analysis.utils.rsync_cluster_data.rst new file mode 100644 index 0000000..d8da8d8 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.utils.rsync_cluster_data.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.utils.rsync\_cluster\_data +====================================================== + +.. currentmodule:: lecilab_behavior_analysis.utils + +.. autofunction:: rsync_cluster_data \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.utils.sound_evidence_strength.rst b/docs/source/api_generated/lecilab_behavior_analysis.utils.sound_evidence_strength.rst new file mode 100644 index 0000000..aaa6f81 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.utils.sound_evidence_strength.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.utils.sound\_evidence\_strength +=========================================================== + +.. currentmodule:: lecilab_behavior_analysis.utils + +.. autofunction:: sound_evidence_strength \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.utils.trial_reaction_time.rst b/docs/source/api_generated/lecilab_behavior_analysis.utils.trial_reaction_time.rst new file mode 100644 index 0000000..d95ed94 --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.utils.trial_reaction_time.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.utils.trial\_reaction\_time +======================================================= + +.. currentmodule:: lecilab_behavior_analysis.utils + +.. autofunction:: trial_reaction_time \ No newline at end of file diff --git a/docs/source/api_generated/lecilab_behavior_analysis.utils.verify_params_time_kernel.rst b/docs/source/api_generated/lecilab_behavior_analysis.utils.verify_params_time_kernel.rst new file mode 100644 index 0000000..57e476e --- /dev/null +++ b/docs/source/api_generated/lecilab_behavior_analysis.utils.verify_params_time_kernel.rst @@ -0,0 +1,6 @@ +lecilab\_behavior\_analysis.utils.verify\_params\_time\_kernel +============================================================== + +.. currentmodule:: lecilab_behavior_analysis.utils + +.. autofunction:: verify_params_time_kernel \ No newline at end of file diff --git a/docs/source/api_index.rst b/docs/source/api_index.rst index ac58f77..cda8044 100644 --- a/docs/source/api_index.rst +++ b/docs/source/api_index.rst @@ -1,25 +1,169 @@ API === -math ----- +utils +----- -.. currentmodule:: lecilab_behavior_analysis.math +.. currentmodule:: lecilab_behavior_analysis.utils .. autosummary:: :toctree: api_generated :template: function.rst - add_two_integers - subtract_two_integers + get_session_performance + get_day_performance + get_session_number_of_trials + get_day_number_of_trials + get_start_and_end_times + get_block_size_truncexp_mean30 + get_right_bias + get_block_size_uniform_pm30 + column_checker + get_text_from_subset_df + get_text_from_subject_df + load_example_data + get_sound_stats + analyze_sound_matrix + sound_evidence_strength + get_outpath + get_idibaps_cluster_credentials + get_server_projects + get_folders_from_server + get_animals_in_project + rsync_cluster_data + list_to_colors + is_this_a_miss_trial + trial_reaction_time + first_poke_after_stimulus_state + get_last_poke_of_trial + get_last_poke_before_stimulus_state + get_dictionary_event_as_list + get_repeat_or_alternate_to_numeric + lapse_logistic_independent + fit_lapse_logistic_independent + get_trial_port_hold + logi_model_fit_input + logi_model_fit + hierarchical_partitioning + previous_impact_on_time_kernel + verify_params_time_kernel + generate_tv_report + load_all_events + filter_variables_for_model + find_next_end_task_time_in_events + get_session_box_usage -greetings ---------- +df_transforms +------------- -.. currentmodule:: lecilab_behavior_analysis.greetings +.. currentmodule:: lecilab_behavior_analysis.df_transforms .. autosummary:: :toctree: api_generated - :template: class.rst + :template: function.rst + + fill_missing_data + get_dates_df + get_water_df + get_repeat_or_alternate_series + repeat_or_alternate_series_comparison + add_port_where_animal_comes_from + get_performance_through_trials + get_repeat_or_alternate_performance + get_evidence_ratio + get_left_choice + get_performance_by_difficulty + add_auditory_real_statistics + get_performance_by_difficulty_ratio + get_performance_by_difficulty_diff + side_and_difficulty_to_numeric + get_training_summary_matrix + calculate_time_between_trials_and_reaction_time + add_inter_trial_interval_column_to_df + add_trial_duration_column_to_df + add_day_column_to_df + add_trial_of_day_column_to_df + add_trial_misses + get_start_and_end_of_sessions_df + get_daily_occupancy_percentages + get_occupancy_heatmap + get_occupancy_matrix + reformat_df_columns + analyze_df + add_mouse_first_choice + add_mouse_last_choice + get_performance_by_decision_df + get_triangle_polar_plot_df + get_bias_evolution_df + points_to_lines_for_bias_evolution + create_transition_matrix + add_visual_stimulus_difference + get_center_hold_df + get_reaction_times_by_date_df + get_left_auditory_stim + get_choice_before + parameters_for_fit + get_time_kernel_impact + +plots +----- + +.. currentmodule:: lecilab_behavior_analysis.plots + +.. autosummary:: + :toctree: api_generated + :template: function.rst + + training_calendar_plot + rasterize_plot + trials_by_session_plot + trials_by_day_plot + trials_by_session_hist + performance_vs_trials_plot + water_by_date_plot + summary_text_plot + number_of_correct_responses_plot + correct_left_and_right_plot + correct_left_and_right_plot_multisensory + repeat_or_alternate_performance_plot + psychometric_plot + summary_matrix_plot + side_correct_performance_plot + plot_time_between_trials_and_reaction_time + bias_vs_trials_plot + performance_by_decision_plot + triangle_polar_plot + plot_decision_evolution_triangle + plot_percentage_of_occupancy_per_day + plot_training_times_heatmap + plot_training_times_clock_heatmap + plot_transition_matrix + plot_transition_network_with_curved_edges + plot_number_of_pokes_histogram + plot_port_holding_time_histogram + plot_mean_and_cis_by_date + plot_table_from_df + plot_filter_model_variables + +figure_maker +------------ + +.. currentmodule:: lecilab_behavior_analysis.figure_maker + +.. autosummary:: + :toctree: api_generated + :template: function.rst + + subject_progress_figure + session_summary_figure + +generate_fake_dataset +--------------------- + +.. currentmodule:: lecilab_behavior_analysis.generate_fake_dataset + +.. autosummary:: + :toctree: api_generated + :template: function.rst - Greetings + generate_fake_dataset diff --git a/lecilab_behavior_analysis/generate_fake_dataset.py b/lecilab_behavior_analysis/generate_fake_dataset.py index 92ae04c..3ff3eb0 100644 --- a/lecilab_behavior_analysis/generate_fake_dataset.py +++ b/lecilab_behavior_analysis/generate_fake_dataset.py @@ -2,7 +2,7 @@ import numpy as np import pandas as pd from pathlib import Path -from utils import get_outpath +from .utils import get_outpath import random def generate_fake_dataset(outfile: str) -> None: