From e675b2ab642a6884c8eb29c43452d383d5a94077 Mon Sep 17 00:00:00 2001
From: Luis Raimundo <esmllr@gmail.com>
Date: Sun, 7 Jun 2026 21:27:50 +0100
Subject: [PATCH] Add CLI branch coverage tests

---
 tests/test_cli_additional.py | 134 +++++++++++++++++++++++++++++++++++
 1 file changed, 134 insertions(+)
 create mode 100644 tests/test_cli_additional.py

diff --git a/tests/test_cli_additional.py b/tests/test_cli_additional.py
new file mode 100644
index 0000000..13690a3
--- /dev/null
+++ b/tests/test_cli_additional.py
@@ -0,0 +1,134 @@
+"""Focused tests for ``iav.cli``."""
+
+from __future__ import annotations
+
+import runpy
+import sys
+from pathlib import Path
+
+import pytest
+
+from iav.analysis_enums import IntervallicHeadlineMode
+from iav.cli import main
+
+
+def test_verify_canonical_missing_input_returns_zero_without_batch(tmp_path, monkeypatch):
+    output_dir = tmp_path / "verify_out"
+    missing_input = tmp_path / "no_such_input_dir"
+
+    verify_called: list[Path] = []
+
+    def fake_verify(output_dir_arg):
+        verify_called.append(output_dir_arg)
+        return 0
+
+    batch_called: list[object] = []
+
+    def fake_batch(_cfg):
+        batch_called.append(True)
+
+    monkeypatch.setattr("iav.cli.run_canonical_verification", fake_verify)
+    monkeypatch.setattr("iav.cli.run_batch", fake_batch)
+
+    code = main(
+        [
+            "--verify-canonical",
+            "-i",
+            str(missing_input),
+            "-o",
+            str(output_dir),
+        ]
+    )
+
+    assert code == 0
+    assert verify_called == [output_dir]
+    assert batch_called == []
+
+
+@pytest.mark.parametrize(
+    "input_path_factory",
+    [
+        lambda tmp: tmp / "missing_input_dir",
+        lambda tmp: _write_file(tmp / "notes.txt", "not a directory"),
+    ],
+)
+def test_main_returns_two_when_input_not_directory(
+    tmp_path, capsys, input_path_factory
+):
+    input_path = input_path_factory(tmp_path)
+    output_path = tmp_path / "output"
+
+    code = main(["-i", str(input_path), "-o", str(output_path)])
+
+    assert code == 2
+    captured = capsys.readouterr()
+    assert "Input not found:" in captured.err
+    assert str(input_path) in captured.err
+
+
+def test_main_maps_arguments_to_batch_config(tmp_path, monkeypatch):
+    input_dir = tmp_path / "corpus_in"
+    input_dir.mkdir()
+    output_dir = tmp_path / "corpus_out"
+
+    captured: list[object] = []
+
+    def fake_run_batch(cfg):
+        captured.append(cfg)
+
+    monkeypatch.setattr("iav.cli.run_batch", fake_run_batch)
+
+    code = main(
+        [
+            "-i",
+            str(input_dir),
+            "-o",
+            str(output_dir),
+            "--edo",
+            "24",
+            "--headline",
+            "hybrid_intervallic_homogeneity",
+            "--method",
+            "entropy",
+            "--alpha",
+            "0.42",
+            "--auto-alpha",
+            "--k-auto",
+            "6",
+            "--no-dedupe",
+            "--sounding-transpose",
+        ]
+    )
+
+    assert code == 0
+    assert len(captured) == 1
+    cfg = captured[0]
+    assert cfg.input_dir == input_dir
+    assert cfg.output_dir == output_dir
+    assert cfg.edo == 24
+    assert cfg.headline_mode == IntervallicHeadlineMode.HYBRID
+    assert cfg.homogeneity_method == "entropy"
+    assert cfg.hybrid_alpha_base == pytest.approx(0.42)
+    assert cfg.auto_alpha is True
+    assert cfg.k_auto == 6
+    assert cfg.remove_duplicates is False
+    assert cfg.apply_sounding_transpose is True
+
+
+def _write_file(path: Path, text: str) -> Path:
+    path.write_text(text, encoding="utf-8")
+    return path
+
+
+def test_cli_module_main_entrypoint(tmp_path, monkeypatch):
+    input_dir = tmp_path / "in"
+    input_dir.mkdir()
+    output_dir = tmp_path / "out"
+
+    monkeypatch.setattr(sys, "argv", ["iav-analyze", "-i", str(input_dir), "-o", str(output_dir)])
+    monkeypatch.setattr("iav.cli.run_batch", lambda _cfg: {"results": []})
+
+    with pytest.raises(SystemExit) as excinfo:
+        runpy.run_module("iav.cli", run_name="__main__")
+
+    assert excinfo.value.code == 0