From 12b92f1dca5a97a8ddabf0203b11c3e13546ace4 Mon Sep 17 00:00:00 2001 From: HaamsRee Date: Mon, 15 Sep 2025 09:33:29 -0500 Subject: [PATCH] Fixed Slide.warp_slide where it would not load the src_f file even when specified --- valis/registration.py | 11 ++++++++++- 1 file changed, 10 insertions(+), 1 deletion(-) diff --git a/valis/registration.py b/valis/registration.py index fb98c30b..cb7cab20 100644 --- a/valis/registration.py +++ b/valis/registration.py @@ -922,6 +922,11 @@ def warp_slide(self, level, non_rigid=True, crop=True, interp_method : str Interpolation method used when warping slide. Default is "bicubic" + reader: SlideReader, optional + SlideReader to be used to read the slide (file). If both src_f and + reader are None, use the slide object's reader. If src_f is not the same as the + slide object's, get new slide reader redirected to src_f. Can also be manually specified. + """ if src_f is None: src_f = self.src_f @@ -987,7 +992,11 @@ def warp_slide(self, level, non_rigid=True, crop=True, bg_color = None if reader is None: - reader = self.reader + if src_f == self.src_f: + reader = self.reader + else: + slide_reader_cls = slide_io.get_slide_reader(src_f) + reader = slide_reader_cls(src_f) warped_slide = slide_tools.warp_slide(src_f, M=self.M, transformation_src_shape_rc=self.processed_img_shape_rc,