example_seperate.py

'''
example for using the toolkit functions seperately
'''

from neuron import h
import NEURON2COMSOL_auto_conv as N2C   
import COMSOL2NEURON_auto_conv as C2N

# create a simple fascicle in NEURON
h.load_file(r"nerve/simpleFascicle.hoc")

# define arguements
path2server = 'C:\\Program Files\\COMSOL\\COMSOL56\\Multiphysics\\bin\\win64'
path2mph = 'C:\\Program Files\\COMSOL\\COMSOL56\\Multiphysics\\mli'

simBox_3D = [500, 0, 0]
simBox_size = 1200

nerve_3D = [-50, 0, 0]
nerve_R = 400
nerve_L = 1100

substrate_3D = [500, 0, -250]
substrate_W = 200
substrate_L = 1000
substrate_D = 30
e_R = 10

fasc_3D = [[-3, 0, 0]]
fasc_R = [200]
fasc_L = 1006

# seperate usage of N2C
N2C.convert(path2server, path2mph, simBox_3D, simBox_size, nerve_3D, nerve_R, nerve_L, fasc_3D, fasc_R, fasc_L, \
                                substrate_3D, substrate_W, substrate_L, substrate_D, e_R, e_type = "hexapolar")

# # uncomment for seperate usage of C2N
# C2N.convert()