[Proteina-Complexa] Sweep inf_* configs crash at evaluate (generate/evaluate path mismatch)

[xinyu-dev]

In a sweep, complexa design <inf_*> runs every stage against the same config (cli_runner.py:648). generate writes to root_path (baked into inf_*), but evaluate reads sample_storage_path — which is absent from inf_* — so it rebuilds a different path (evaluate.py:752,760) that was never written → FileNotFoundError. (nb03 works because its config bakes neither path, so both stages rebuild the same one.)

Severity: High · Status: workaround verified; upstream open

Steps to reproduce

1. complexa generate <sweep> → produces configs/inference_configs/inf_*.yaml.
2. complexa design configs/inference_configs/inf_0_*.yaml.
3. generate succeeds; evaluate → FileNotFoundError on the sample path.

Fix

Pass both paths explicitly: ++sample_storage_path=./inference/<stem> ++output_dir=./evaluation_results/<stem>, or run complexa analysis configs/eval_configs/eval_*.yaml. Upstream: bake sample_storage_path and output_dir into inf_* (generate_inference_configs.py:327); a sample_storage_path-only fix is insufficient (output_dir is None still trips the guard).

Related

run_name is appended to the inference/ dir (generate.py:62) but not evaluation_results/ (evaluate.py:756), which compounds the confusion when locating results.

Environment

NVIDIA A100 80GB PCIe · driver 565.57.01 · CUDA 12.7 · repo branch dev @ 916eaae · UV runtime.