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[Proteina-Complexa] Skills lack a \"Limitations\" section (model scope is unstated) #47

@xinyu-dev

Description

@xinyu-dev

The skills never state the model's scope, so users assume capabilities it lacks. Established from code/configs, Complexa does not: design small molecules (the ligand is a fixed input); accept RNA/DNA targets (no input field, no trained checkpoint, complex filter may drop NA chains); take typed-in sequences (it's structure-based); design short peptides (binders are ~100+ residues). The ligand pipeline also merges multiple ligands into one and keeps a single protein chain.

Severity: Medium · Status: open

Steps to reproduce

N/A (documentation gap) — e.g. a user tries to design a small-molecule binder or an RNA-target binder and only discovers it's unsupported after full setup.

Fix

Add a "What it does / doesn't" block to complexa-design/SKILL.md.

Environment

NVIDIA A100 80GB PCIe · driver 565.57.01 · CUDA 12.7 · repo branch dev @ 916eaae · UV runtime.

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