From 47fff577f9b553f66e4de59ebfbf21dd2612336d Mon Sep 17 00:00:00 2001 From: Matthew Pharr Date: Wed, 8 Jul 2026 01:27:47 -0400 Subject: [PATCH 1/8] packaging: fold service deps into base, lower floor to 3.12 Make `pip install magnetics` runnable with no extras: move fastapi/ uvicorn into core dependencies (+ platformdirs), drop the `service` extra, and add `magnetics` / `magnetics-fetch` console scripts. Lower requires-python to >=3.12 (the 3.14 pin was a project choice, not forced by any dependency; .python-version stays 3.14 for dev). Fixes 9 PEP 758 unparenthesized-`except` sites that only compiled on 3.14, and adds a 3.12+3.14 CI test matrix. Co-Authored-By: Claude Opus 4.8 (1M context) --- .github/workflows/ci.yml | 18 +- pyproject.toml | 17 +- run.sh | 8 +- src/magnetics/__init__.py | 6 +- src/magnetics/core/qs_device.py | 4 +- src/magnetics/core/qs_fit.py | 2 +- src/magnetics/data/device_geom.py | 2 +- src/magnetics/service/app.py | 2 +- src/magnetics/service/export.py | 4 +- src/magnetics/service/nodes.py | 6 +- uv.lock | 568 +++++++++++++++++++++++++++++- 11 files changed, 594 insertions(+), 43 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 0341783..c9df706 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -36,31 +36,39 @@ jobs: - '.github/workflows/ci.yml' python: - name: Python + name: Python (${{ matrix.python }}) needs: changes if: ${{ needs.changes.outputs.python == 'true' }} runs-on: ubuntu-latest + strategy: + fail-fast: false + matrix: + # 3.12 is the supported floor (pyproject requires-python); 3.14 is the dev pin. + python: ["3.12", "3.14"] steps: - uses: actions/checkout@v4 - - name: Set up uv (Python 3.14 from .python-version) + - name: Set up uv uses: astral-sh/setup-uv@v5 with: enable-cache: true - name: Install project + deps - run: uv sync --extra service + run: uv sync --python ${{ matrix.python }} + # ruff lint/format are Python-version-agnostic; run once, on the floor. - name: Lint (ruff) + if: ${{ matrix.python == '3.12' }} run: uvx ruff check . - name: Format check (ruff format) + if: ${{ matrix.python == '3.12' }} run: uvx ruff format --check . - name: Tests (pytest; tolerate "no tests collected" while skeletal) run: | set +e - uv run --with pytest pytest -q + uv run --python ${{ matrix.python }} --with pytest pytest -q code=$? set -e # exit 5 = no tests collected yet (skeleton); treat as success @@ -80,7 +88,7 @@ jobs: enable-cache: true - name: Install project + deps - run: uv sync --extra service + run: uv sync - name: Typecheck (ty) run: uv run ty check src/magnetics diff --git a/pyproject.toml b/pyproject.toml index 87bfc5a..83aea35 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -6,7 +6,7 @@ readme = "README.md" authors = [ { name = "Matthew Pharr", email = "m.pharr@protonmail.com" } ] -requires-python = ">=3.14" +requires-python = ">=3.12" dependencies = [ # data-reading (Slow Rollers' shot loaders / Data layer) "h5netcdf>=1.8.1", @@ -16,13 +16,12 @@ dependencies = [ "matplotlib>=3.11.0", "numpy>=2.4.6", "scipy>=1.18.0", -] - -# Web deps stay optional so the library imports cleanly for notebook users. -[project.optional-dependencies] -service = [ + # web service + one-command launcher (bundled GUI). Core deps so a plain + # `pip install magnetics` can run the GUI with no extras. "fastapi>=0.138.0", "uvicorn[standard]>=0.49.0", + # per-user data dir for installed (non-checkout) runs; see data/h5source.py + "platformdirs>=4", ] [build-system] @@ -42,9 +41,13 @@ dev = [ "httpx>=0.28.1", ] -# Run the mock service: uv run --extra service magnetics-service [project.scripts] +# One-command launcher: start the service and open the bundled GUI in a browser. +magnetics = "magnetics.cli:main" +# Start just the service (honors HOST/PORT env vars); kept for compatibility. magnetics-service = "magnetics.service.app:main" +# Fetch a shot to the local data dir (the toksearch/mdsthin CLI). +magnetics-fetch = "magnetics.data.fetch.toksearch:main" [tool.ruff] line-length = 100 # target version is inferred from requires-python diff --git a/run.sh b/run.sh index b849ec3..5024688 100755 --- a/run.sh +++ b/run.sh @@ -31,7 +31,7 @@ case "$MODE" in --live|live|"") echo "▶ syncing Python deps (uv)…" - uv sync --extra service --quiet + uv sync --quiet # Auto-pick a free backend port (prefer 8000) so several checkouts can run at # once without colliding. Vite already auto-picks a free GUI port; we just wire # the GUI to whichever backend port we grabbed. Override with `PORT=NNNN ./run.sh`. @@ -60,7 +60,7 @@ else: # everything 8000-8099 busy — let the OS pick any free port PY )}" echo "▶ starting service (:$PORT) + GUI dev server (Vite auto-port)…" - PORT="$PORT" uv run --extra service magnetics-service & + PORT="$PORT" uv run magnetics-service & SERVICE_PID=$! ( cd gui/web && VITE_API_BASE="http://127.0.0.1:$PORT" npm run dev ) & GUI_PID=$! @@ -73,7 +73,7 @@ PY --prod|prod) echo "▶ syncing Python deps (uv)…" - uv sync --extra service --quiet + uv sync --quiet echo "▶ building GUI…" ( cd gui/web && npm run build ) echo "▶ staging built GUI into the package (magnetics/service/webapp)…" @@ -82,7 +82,7 @@ PY echo "" echo " ✓ open http://127.0.0.1:8000 (single origin — GUI served on one port)" echo "" - exec uv run --extra service magnetics-service + exec uv run magnetics-service ;; *) diff --git a/src/magnetics/__init__.py b/src/magnetics/__init__.py index f45d0ef..ec1ee93 100644 --- a/src/magnetics/__init__.py +++ b/src/magnetics/__init__.py @@ -1,9 +1,9 @@ """magnetics — device-agnostic 3D magnetic-sensor analysis of tokamak MHD instabilities. Importable as a plain library (e.g. in a Jupyter notebook): `import magnetics`. -The core analysis pulls only numpy/scipy/matplotlib; the FastAPI service is an -optional extra (`pip install magnetics[service]` / `uv sync --extra service`) so -notebook users never need a web stack. See docs/CONTRACT.md and docs/VISION.md. +The core analysis pulls only numpy/scipy/matplotlib; the FastAPI service and the +bundled GUI ship in the base install so `pip install magnetics` + `magnetics` +runs the app with no extras. See docs/CONTRACT.md and docs/VISION.md. """ __version__ = "0.1.0" diff --git a/src/magnetics/core/qs_device.py b/src/magnetics/core/qs_device.py index d79a38b..c4646c7 100644 --- a/src/magnetics/core/qs_device.py +++ b/src/magnetics/core/qs_device.py @@ -116,7 +116,7 @@ def resolve_one(cf): def _to_float(s): try: return float(s) - except TypeError, ValueError: + except (TypeError, ValueError): return float("nan") @@ -219,7 +219,7 @@ def load_wall(device="DIII-D", shot=None): """ try: dev = load_device(device) - except FileNotFoundError, OSError, ValueError: + except (FileNotFoundError, OSError, ValueError): return None, None fw = _devices.feature_at(dev, "first_wall", 0 if shot is None else int(shot)) if not fw or "r" not in fw or "z" not in fw: diff --git a/src/magnetics/core/qs_fit.py b/src/magnetics/core/qs_fit.py index 8dc8bcc..14113cf 100644 --- a/src/magnetics/core/qs_fit.py +++ b/src/magnetics/core/qs_fit.py @@ -349,7 +349,7 @@ def _printv(*a): wtest = np.linalg.svd(np.array(A_cols).T, compute_uv=False) if np.abs(wtest[0] / wtest[-1]) > 1e19: raise ValueError("Bad sensor distribution") - except ValueError, np.linalg.LinAlgError: + except (ValueError, np.linalg.LinAlgError): logger.error(" - Ill-conditioned mode (%s,%s); fitting single component", n, m) x0 = x1[0] + delta_degrees(x1[0], x2[0]) / 2.0 y0 = y1[0] + delta_degrees(y1[0], y2[0]) / 2.0 diff --git a/src/magnetics/data/device_geom.py b/src/magnetics/data/device_geom.py index 1bb70b7..dd8544e 100644 --- a/src/magnetics/data/device_geom.py +++ b/src/magnetics/data/device_geom.py @@ -53,7 +53,7 @@ def _shot_int(shot) -> int | None: try: return int(shot) - except TypeError, ValueError: + except (TypeError, ValueError): return None diff --git a/src/magnetics/service/app.py b/src/magnetics/service/app.py index 393353f..15edd46 100644 --- a/src/magnetics/service/app.py +++ b/src/magnetics/service/app.py @@ -412,7 +412,7 @@ def _webapp_dir() -> Path | None: def main() -> None: - """Console entry point: `uv run --extra service magnetics-service`. + """Console entry point: `uv run magnetics-service` (or `magnetics-service`). Honors ``HOST``/``PORT`` env vars (default 127.0.0.1:8000) so several checkouts can run at once — ``run.sh`` auto-picks a free ``PORT`` and wires the GUI to it. diff --git a/src/magnetics/service/export.py b/src/magnetics/service/export.py index ec0454e..4fe1cc5 100644 --- a/src/magnetics/service/export.py +++ b/src/magnetics/service/export.py @@ -38,7 +38,7 @@ def _f(x): try: return np.asarray(np.vectorize(_f, otypes=[float])(arr), dtype=float) - except ValueError, TypeError: + except (ValueError, TypeError): return arr # ragged / non-numeric — let h5py store what it can @@ -153,7 +153,7 @@ def _fill(h5) -> None: with h5py.File(buf, "w") as h5: _fill(h5) return buf.getvalue() - except ValueError, OSError: + except (ValueError, OSError): with tempfile.NamedTemporaryFile(suffix=".h5") as tmp: with h5py.File(tmp.name, "w") as h5: _fill(h5) diff --git a/src/magnetics/service/nodes.py b/src/magnetics/service/nodes.py index 54502e6..e27028e 100644 --- a/src/magnetics/service/nodes.py +++ b/src/magnetics/service/nodes.py @@ -52,7 +52,7 @@ def _f(params, key, default=None): return default try: return float(params[key]) - except TypeError, ValueError: + except (TypeError, ValueError): return default @@ -244,7 +244,7 @@ def _kappa_at(shot, t0_ms=None): if "kappa" not in h5source.channel_names(shot): return None t, d = h5source.load_channel(shot, "kappa") - except KeyError, OSError: + except (KeyError, OSError): return None d = np.asarray(d, dtype=float) good = np.isfinite(d) @@ -1361,7 +1361,7 @@ def _num_attr(val): (a whole-shot pull writes ``tmin``/``tmax`` as the string ``'*'``).""" try: return float(val) - except TypeError, ValueError: + except (TypeError, ValueError): return None diff --git a/uv.lock b/uv.lock index 278f60b..7c6e96c 100644 --- a/uv.lock +++ b/uv.lock @@ -1,14 +1,17 @@ version = 1 revision = 3 -requires-python = ">=3.14" +requires-python = ">=3.12" resolution-markers = [ - "sys_platform == 'win32'", - "sys_platform == 'emscripten'", - "sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version >= '3.14' and sys_platform == 'win32'", + "python_full_version >= '3.14' and sys_platform == 'emscripten'", + "python_full_version >= '3.14' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version < '3.14' and sys_platform == 'win32'", + "python_full_version < '3.14' and sys_platform == 'emscripten'", + "python_full_version < '3.14' and sys_platform != 'emscripten' and sys_platform != 'win32'", ] [options] -exclude-newer = "2026-06-24T20:53:08.791939Z" +exclude-newer = "2026-07-01T05:08:45.379638Z" exclude-newer-span = "P1W" [[package]] @@ -35,6 +38,7 @@ version = "4.14.0" source = { registry = "https://pypi.org/simple" } dependencies = [ { name = "idna" }, + { name = "typing-extensions", marker = "python_full_version < '3.13'" }, ] sdist = { url = "https://files.pythonhosted.org/packages/1c/b5/001890774a9552aff22502b8da382593109ce0c95314abaebbb116567545/anyio-4.14.0.tar.gz", hash = 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From: Matthew Pharr Date: Wed, 8 Jul 2026 01:35:35 -0400 Subject: [PATCH 2/8] cli: add `magnetics` launcher + installed-mode data dir New `magnetics` console script starts the service and opens the bundled GUI in a browser (free-port pick like run.sh; browser opens once the server binds; --host/--port/--no-browser). No Node/dev stack needed. data_dir() now falls back to a per-user data dir (platformdirs) when not run from a source checkout, so an installed wheel writes shot data to a real, writable location instead of a path under site-packages. $MAGNETICS_DATA_DIR still overrides. Drop inspect.py's dead default (pointed at a never-shipped shot file). Co-Authored-By: Claude Opus 4.8 (1M context) --- src/magnetics/cli.py | 88 ++++++++++++++++++++++++++++++++++ src/magnetics/data/h5source.py | 20 ++++++-- src/magnetics/data/inspect.py | 9 +--- tests/test_cli.py | 51 ++++++++++++++++++++ 4 files changed, 157 insertions(+), 11 deletions(-) create mode 100644 src/magnetics/cli.py create mode 100644 tests/test_cli.py diff --git a/src/magnetics/cli.py b/src/magnetics/cli.py new file mode 100644 index 0000000..b416964 --- /dev/null +++ b/src/magnetics/cli.py @@ -0,0 +1,88 @@ +"""One-command launcher for non-developer users. + +`magnetics` starts the FastAPI service (which serves the bundled GUI on a single +origin) and opens it in the default web browser. This is the counterpart to the +developer `run.sh` flow, but needs no Node/dev stack — the GUI is shipped inside +the wheel (see ``service.app._webapp_dir``). + +Examples: + magnetics # auto-pick a free port, open the browser + magnetics --port 8000 # fixed port + magnetics --no-browser # headless (e.g. on a server / in CI) +""" + +from __future__ import annotations + +import argparse +import socket +import threading +import time +import webbrowser + + +def _free_port(host: str, start: int = 8000, tries: int = 100) -> int: + """First free TCP port at/above ``start`` on ``host`` (matches run.sh).""" + for port in range(start, start + tries): + with socket.socket() as s: + try: + s.bind((host, port)) + return port + except OSError: + continue + # Everything in the window is busy — let the OS assign any free port. + with socket.socket() as s: + s.bind((host, 0)) + return s.getsockname()[1] + + +def main(argv: list[str] | None = None) -> int: + ap = argparse.ArgumentParser( + prog="magnetics", + description="Start the magnetics GUI and open it in your browser.", + ) + ap.add_argument("--host", default="127.0.0.1", help="bind address (default: 127.0.0.1)") + ap.add_argument( + "--port", + type=int, + default=None, + help="port to serve on (default: first free port from 8000)", + ) + ap.add_argument( + "--no-browser", + action="store_true", + help="do not open a web browser (e.g. headless server)", + ) + args = ap.parse_args(argv) + + # Deferred so `magnetics --help` stays fast and needs no heavy imports. + import uvicorn + + from magnetics.service.app import _webapp_dir, app + + if _webapp_dir() is None: + print( + "warning: no bundled GUI found — only the /api/* routes will be served. " + "(This build has no staged frontend; reinstall a release wheel for the GUI.)" + ) + + port = args.port if args.port is not None else _free_port(args.host) + url = f"http://{args.host}:{port}" + server = uvicorn.Server(uvicorn.Config(app, host=args.host, port=port)) + + if not args.no_browser: + + def _open_when_ready() -> None: + # Open only once the server has bound, so the first request succeeds. + while not server.started: + time.sleep(0.05) + webbrowser.open(url) + + threading.Thread(target=_open_when_ready, daemon=True).start() + + print(f" magnetics GUI: {url} (Ctrl-C to stop)") + server.run() + return 0 + + +if __name__ == "__main__": + raise SystemExit(main()) diff --git a/src/magnetics/data/h5source.py b/src/magnetics/data/h5source.py index 2f80140..0a5ea7e 100644 --- a/src/magnetics/data/h5source.py +++ b/src/magnetics/data/h5source.py @@ -5,8 +5,9 @@ (per-channel `time`, no analysis attr). A channel is read the same way in both: `/{name}/data` + `/{name}/time`. -The HDF5 output directory is `$MAGNETICS_DATA_DIR` or the repo's `data/` dir -relative to this file (where the fetcher writes `datafile/`). +The HDF5 output directory is `$MAGNETICS_DATA_DIR`, or the repo's `data/` dir in a +source checkout, or the per-user data dir for an installed package (see +`data_dir()`). The fetcher writes `datafile/` under it. """ from __future__ import annotations @@ -23,8 +24,19 @@ def data_dir() -> Path: env = os.environ.get("MAGNETICS_DATA_DIR") if env: return Path(env).expanduser().resolve() - # src/magnetics/data/h5source.py -> repo root is parents[3] - return Path(__file__).resolve().parents[3] / "data" + # Source checkout: src/magnetics/data/h5source.py -> repo root is parents[3]. + # Require both markers so an installed wheel under site-packages (whose + # great-grandparent is not the repo) never falsely matches. + repo = Path(__file__).resolve().parents[3] + if (repo / "pyproject.toml").is_file() and (repo / "gui").is_dir(): + return repo / "data" + # Installed (non-checkout): per-user data dir, e.g. ~/.local/share/magnetics + # (Linux), ~/Library/Application Support/magnetics (macOS). Created if absent. + from platformdirs import user_data_dir + + d = Path(user_data_dir("magnetics")) + d.mkdir(parents=True, exist_ok=True) + return d @lru_cache(maxsize=1) diff --git a/src/magnetics/data/inspect.py b/src/magnetics/data/inspect.py index f13ca2f..a42963c 100644 --- a/src/magnetics/data/inspect.py +++ b/src/magnetics/data/inspect.py @@ -3,8 +3,7 @@ Print the contents of an HDF5 file (e.g. one written by toksearch_fetch.py). Usage: - python data/inspect_h5.py path/to/file.h5 - python data/inspect_h5.py # defaults to data/shot_184927.h5 + python -m magnetics.data.inspect path/to/file.h5 """ import argparse @@ -12,17 +11,13 @@ import h5py -DEFAULT_H5 = Path(__file__).resolve().parent / "shot_184927.h5" - def main(argv=None) -> int: ap = argparse.ArgumentParser(description="Print the contents of an HDF5 file.") ap.add_argument( "path", - nargs="?", - default=str(DEFAULT_H5), - help=f"HDF5 file to inspect (default: {DEFAULT_H5})", + help="HDF5 file to inspect", ) args = ap.parse_args(argv) path = args.path diff --git a/tests/test_cli.py b/tests/test_cli.py new file mode 100644 index 0000000..9f1137f --- /dev/null +++ b/tests/test_cli.py @@ -0,0 +1,51 @@ +"""The `magnetics` launcher: port picking, data-dir resolution, arg parsing.""" + +from __future__ import annotations + +import socket + +import pytest + +from magnetics import cli +from magnetics.data import h5source + + +def test_free_port_returns_bindable_port(): + port = cli._free_port("127.0.0.1") + # The returned port must actually be free (bindable right now). + with socket.socket() as s: + s.bind(("127.0.0.1", port)) + + +def test_free_port_skips_occupied_start(): + # Occupy `start`; _free_port must step past it. + with socket.socket() as busy: + busy.bind(("127.0.0.1", 0)) + start = busy.getsockname()[1] + busy.listen() + port = cli._free_port("127.0.0.1", start=start, tries=50) + assert port != start + with socket.socket() as s: + s.bind(("127.0.0.1", port)) + + +def test_help_exits_clean(capsys): + # --help must not trigger the deferred heavy imports; argparse exits 0. + with pytest.raises(SystemExit) as exc: + cli.main(["--help"]) + assert exc.value.code == 0 + assert "magnetics GUI" in capsys.readouterr().out or True # help text printed + + +def test_data_dir_env_override(tmp_path, monkeypatch): + monkeypatch.setenv("MAGNETICS_DATA_DIR", str(tmp_path / "shots")) + assert h5source.data_dir() == (tmp_path / "shots").resolve() + + +def test_data_dir_source_checkout(monkeypatch): + # In this repo checkout (pyproject.toml + gui/ both present), data_dir() is + # the repo's data/ dir, not the per-user fallback. + monkeypatch.delenv("MAGNETICS_DATA_DIR", raising=False) + d = h5source.data_dir() + assert d.name == "data" + assert (d.parent / "pyproject.toml").is_file() From 3240dbb33748781a460bd13928e8efcc31a1b987 Mon Sep 17 00:00:00 2001 From: Matthew Pharr Date: Wed, 8 Jul 2026 01:40:11 -0400 Subject: [PATCH 3/8] gui: default production build to same-origin live backend MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit The packaged app serves the GUI and the API on one origin, but api.ts decided live-vs-mock from the build-time VITE_API_BASE truthiness, so a plain `vite build` (no env) shipped a MOCK-mode bundle — `run.sh --prod` and any pip-installed app silently served demo fixtures. Now: an explicit VITE_API_BASE still wins (trailing slashes trimmed); a production build with none defaults to "" (same-origin, relative /api/… URLs); the dev server stays in mock mode. Since "" is a valid live base, every live-vs-mock check switches from truthiness to an explicit LIVE flag, and QuasiStationaryTab's `!apiBase()` guard becomes `!usingLiveBackend()`. Verified with Playwright against the packaged app: badge "● live backend", same-origin /api/ requests, zero /mock/ hits. Co-Authored-By: Claude Opus 4.8 (1M context) --- .../components/tabs/QuasiStationaryTab.tsx | 4 +- gui/web/src/lib/api.ts | 38 ++++++++++++------- 2 files changed, 27 insertions(+), 15 deletions(-) diff --git a/gui/web/src/components/tabs/QuasiStationaryTab.tsx b/gui/web/src/components/tabs/QuasiStationaryTab.tsx index 53e0928..15b186f 100644 --- a/gui/web/src/components/tabs/QuasiStationaryTab.tsx +++ b/gui/web/src/components/tabs/QuasiStationaryTab.tsx @@ -4,7 +4,7 @@ import { useCallback, useEffect, useMemo, useRef, useState } from "react"; import type Plotly from "plotly.js-dist-min"; import { useStore } from "../../store"; -import { apiBase, startFetch } from "../../lib/api"; +import { apiBase, startFetch, usingLiveBackend } from "../../lib/api"; import { useNode } from "../../lib/useNode"; import NodeView from "../../lib/NodeView"; import Plot from "../../lib/Plot"; @@ -386,7 +386,7 @@ export default function QuasiStationaryTab({ machine }: { machine: string }) { const plotCustomSignals = useCallback(() => { const names = customText.split(/[\s,]+/).map(s => s.trim()).filter(Boolean); if (!names.length || names.some(n => !POINTNAME_RE.test(n))) return; - if (!apiBase()) { setCustomMsg("✗ no live backend configured — set VITE_API_BASE to fetch data"); return; } + if (!usingLiveBackend()) { setCustomMsg("✗ no live backend configured — run the packaged app or set VITE_API_BASE"); return; } if (credsMissing) { setCustomMsg(`✗ ${CREDS_HINT}`); return; } setCustomBusy(true); setCustomFrac(0); setCustomMsg("fetching…"); void (async () => { diff --git a/gui/web/src/lib/api.ts b/gui/web/src/lib/api.ts index c4f1bf9..bf61cf0 100644 --- a/gui/web/src/lib/api.ts +++ b/gui/web/src/lib/api.ts @@ -2,8 +2,10 @@ // from a mock fixture or a live Python/FastAPI service — it asks for a named node // on a machine and gets a `kind`-tagged result back. // -// VITE_API_BASE unset → static MOCK JSON in public/mock/ (default; no backend) -// VITE_API_BASE=http://127.0.0.1:8000 → live FastAPI service (the real source) +// VITE_API_BASE=http://127.0.0.1:8000 → explicit live FastAPI service (run.sh live) +// unset, production build (`vite build`) → same-origin: "" → relative /api/… URLs +// (the service serves the GUI on one port; this is the packaged/`magnetics` app) +// unset, dev server (`vite`) → static MOCK JSON in public/mock/ (run.sh static) // // IMPORTANT: the files in public/mock/ are TEST FIXTURES ONLY — fake data so we // can build and test the GUI before the Python module + data connectors exist. @@ -11,7 +13,14 @@ // from disk. The mock path is purely a stand-in until those connectors are wired. import type { Node } from "./contract"; -const API_BASE = import.meta.env.VITE_API_BASE as string | undefined; +// An explicit VITE_API_BASE wins (trailing slashes trimmed so we never build +// `//api/…`). Otherwise a production build defaults to same-origin ("" → relative +// URLs), while the dev server stays in mock mode (undefined). Note "" is a valid +// LIVE base, so every live-vs-mock check below tests `LIVE`, never truthiness. +const explicit = import.meta.env.VITE_API_BASE as string | undefined; +const API_BASE: string | undefined = + explicit !== undefined ? explicit.replace(/\/+$/, "") : import.meta.env.PROD ? "" : undefined; +const LIVE = API_BASE !== undefined; export interface MachineInfo { id: string; // shot number or synthetic id, as a string @@ -28,7 +37,7 @@ export interface MachineInfo { /** List available machines/shots. */ export async function fetchMachines(): Promise { - const url = API_BASE ? `${API_BASE}/api/machines` : `${base()}mock/machines.json`; + const url = LIVE ? `${API_BASE}/api/machines` : `${base()}mock/machines.json`; return getJSON(url); } @@ -42,13 +51,13 @@ export async function fetchNode( nodeId: string, params?: Record, ): Promise { - const url = API_BASE + const url = LIVE ? `${API_BASE}/api/node/${machine}/${nodeId}${qs(params)}` : `${base()}mock/${machine}/${nodeId}.json`; return getJSON(url); } -export const usingLiveBackend = (): boolean => !!API_BASE; +export const usingLiveBackend = (): boolean => LIVE; /** URL for the per-node HDF5 data export (GET /api/node/.../download), or null * without a live backend (the static mock fixtures have no serializer). The same @@ -58,7 +67,7 @@ export function nodeDownloadUrl( nodeId: string, params?: Record, ): string | null { - if (!API_BASE) return null; + if (!LIVE) return null; return `${API_BASE}/api/node/${machine}/${nodeId}/download${qs(params)}`; } @@ -74,7 +83,7 @@ export interface ChannelUsage { /** Which pointnames each analysis consumes for a shot; null without a live backend * (the static mock has no channel introspection). */ export async function fetchChannelUsage(shot: string): Promise { - if (!API_BASE) return null; + if (!LIVE) return null; return getJSON(`${API_BASE}/api/channels/${shot}`); } @@ -111,7 +120,7 @@ export interface DeviceInfo { /** List available device configs + their sensor-set names (GET /api/devices). * Empty when no live backend or no device files. */ export async function fetchDevices(): Promise { - if (!API_BASE) return []; + if (!LIVE) return []; try { return await getJSON(`${API_BASE}/api/devices`); } catch { @@ -119,7 +128,10 @@ export async function fetchDevices(): Promise { } } -/** The live backend's base URL (for building an EventSource), or undefined. */ +/** The live backend's base URL for building request/EventSource URLs: "" means + * same-origin (relative URLs), a full URL means an explicit backend, and + * undefined means no live backend (mock mode). Prefer `usingLiveBackend()` for + * a live-vs-mock check — "" is a valid live base and would fail a truthiness test. */ export function apiBase(): string | undefined { return API_BASE; } @@ -127,7 +139,7 @@ export function apiBase(): string | undefined { /** Start a live pull in the background; returns a job_id. Stream its progress at * `${apiBase()}/api/fetch/{job_id}/stream`. Requires a live backend. */ export async function startFetch(body: FetchBody): Promise<{ job_id: string }> { - if (!API_BASE) throw new Error("set VITE_API_BASE to pull live data"); + if (!LIVE) throw new Error("no live backend (run the packaged app or set VITE_API_BASE)"); const res = await fetch(`${API_BASE}/api/fetch`, { method: "POST", headers: { "Content-Type": "application/json" }, @@ -140,14 +152,14 @@ export async function startFetch(body: FetchBody): Promise<{ job_id: string }> { /** Delete one shot's underlying data files from the backend. Requires a live * backend (there is nothing to delete against the static mock). */ export async function deleteMachine(shot: string): Promise { - if (!API_BASE) throw new Error("set VITE_API_BASE to manage live data"); + if (!LIVE) throw new Error("no live backend (run the packaged app or set VITE_API_BASE)"); const res = await fetch(`${API_BASE}/api/machines/${shot}`, { method: "DELETE" }); if (!res.ok) throw new Error(`delete failed (${res.status}): ${await res.text()}`); } /** Delete ALL fetched shot data (the "clear all"). Requires a live backend. */ export async function deleteAllMachines(): Promise { - if (!API_BASE) throw new Error("set VITE_API_BASE to manage live data"); + if (!LIVE) throw new Error("no live backend (run the packaged app or set VITE_API_BASE)"); const res = await fetch(`${API_BASE}/api/machines`, { method: "DELETE" }); if (!res.ok) throw new Error(`clear failed (${res.status}): ${await res.text()}`); } From a65199cae673e2b34fd90edecb962dcfb9ac9999 Mon Sep 17 00:00:00 2001 From: Matthew Pharr Date: Wed, 8 Jul 2026 01:46:48 -0400 Subject: [PATCH 4/8] ci: add tag-triggered PyPI release workflow + RELEASING doc On a `v*` tag: build the GUI, stage it into the package, build sdist + wheel, assert the GUI and device data are bundled, smoke-test the wheel in a clean 3.12 venv (install, import, boot the launcher, curl the API and GUI), then publish via PyPI trusted publishing and cut a GitHub Release. `workflow_dispatch` runs build + smoke test only (no publish) for dry runs. docs/RELEASING.md covers the one-time trusted-publisher setup and the GitFlow-lite release procedure. Co-Authored-By: Claude Opus 4.8 (1M context) --- .github/workflows/release.yml | 101 ++++++++++++++++++++++++++++++++++ docs/RELEASING.md | 64 +++++++++++++++++++++ 2 files changed, 165 insertions(+) create mode 100644 .github/workflows/release.yml create mode 100644 docs/RELEASING.md diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml new file mode 100644 index 0000000..8643023 --- /dev/null +++ b/.github/workflows/release.yml @@ -0,0 +1,101 @@ +name: Release + +# Build the wheel + sdist (GUI bundled), smoke-test the install, and publish to +# PyPI on a version tag. `workflow_dispatch` runs the build + smoke test only +# (no publish) so the pipeline can be exercised before a real release. +# +# Publishing uses PyPI Trusted Publishing (OIDC) — no API token. See +# docs/RELEASING.md for the one-time publisher setup. +on: + push: + tags: ["v*"] + workflow_dispatch: {} + +jobs: + build: + name: Build + smoke test + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v4 + + - uses: actions/setup-node@v4 + with: + node-version: "22" + cache: npm + cache-dependency-path: gui/web/package-lock.json + + - name: Build GUI (production, same-origin) + working-directory: gui/web + run: | + npm ci + npm run build + + - name: Stage built GUI into the package + run: | + rm -rf src/magnetics/service/webapp + cp -r gui/web/dist src/magnetics/service/webapp + + - uses: astral-sh/setup-uv@v5 + with: + enable-cache: true + + - name: Check tag matches project version + if: startsWith(github.ref, 'refs/tags/v') + run: | + ver="$(uv version --short)" + if [ "v$ver" != "$GITHUB_REF_NAME" ]; then + echo "::error::tag $GITHUB_REF_NAME does not match project version v$ver" + exit 1 + fi + + - name: Build sdist + wheel + run: uv build + + - name: Verify GUI + device data are bundled + run: | + set -euo pipefail + unzip -l dist/*.whl | grep -q "magnetics/service/webapp/index.html" + unzip -l dist/*.whl | grep -q "magnetics/data/device/diiid.json" + # uv builds the wheel from the sdist, so the sdist must carry the GUI too. + tar -tzf dist/*.tar.gz | grep -q "src/magnetics/service/webapp/index.html" + + - name: Smoke test the wheel (fresh 3.12 venv, non-checkout cwd) + run: | + set -euo pipefail + uv venv --python 3.12 /tmp/smoke + uv pip install --python /tmp/smoke/bin/python dist/*.whl + /tmp/smoke/bin/python -c "import magnetics; print(magnetics.__version__)" + # Launch from /tmp so data_dir() uses the per-user fallback, not the checkout. + ( cd /tmp && /tmp/smoke/bin/magnetics --no-browser --port 8123 ) & + svc=$! + curl -fsS --retry 20 --retry-connrefused --retry-delay 1 http://127.0.0.1:8123/api/machines >/dev/null + curl -fsS http://127.0.0.1:8123/ | grep -qi " as an + owner of the project (or as whoever will own it), go to + **Your projects → (project) → Publishing**, or for a brand-new name use + **Account → Publishing → Add a pending publisher**, and enter: + - **PyPI project name:** `magnetics` + - **Owner:** `OpenFUSIONToolkit` + - **Repository name:** `Magnetics` + - **Workflow name:** `release.yml` + - **Environment name:** `pypi` + + The project name `magnetics` is currently unclaimed; the pending publisher + reserves it and lets the first tag push create the project. + +2. **Create the `pypi` GitHub environment.** In the repo, **Settings → + Environments → New environment → `pypi`**. Optionally add required reviewers so + a human must approve each publish. The environment name must match the workflow + (`environment: pypi`) and the pending publisher above. + +> The pending publisher **must exist before the first tag push**, or the publish +> step fails auth. That failure is harmless — finish the setup and re-run the job. + +## Cutting a release + +Follows the repo's GitFlow-lite (see `CLAUDE.md`). Versioning is SemVer; the tag +must match `version` in `pyproject.toml` (the workflow enforces this). + +1. On a branch off `develop`, bump `version` in `pyproject.toml` (and keep + `src/magnetics/__init__.py:__version__` in step). Open a PR into `develop`. +2. Open a release PR `develop` → `main` and merge it. +3. Tag the merge commit on `main` and push the tag: + ```bash + git checkout main && git pull + git tag vX.Y.Z + git push origin vX.Y.Z + ``` +4. The `Release` workflow builds, smoke-tests, publishes to PyPI, and creates a + GitHub Release with the artifacts attached. + +## Dry run + +Trigger the workflow manually (**Actions → Release → Run workflow**, or +`gh workflow run release.yml`). `workflow_dispatch` runs the **build + smoke test +only** and skips publishing, so you can validate the pipeline (GUI bundling, wheel +install, launcher boot) without cutting a release. + +## What "installed" looks like for users + +```bash +uvx magnetics # zero-install, ephemeral (uv provisions Python) +# or +pip install magnetics && magnetics # into an existing environment +``` + +Both start the service and open the bundled GUI in a browser. Shot data is written +to a per-user data directory (or `$MAGNETICS_DATA_DIR`); see the README. From ec9cccae659edf04c9997e8253e71a4d8cff1cad Mon Sep 17 00:00:00 2001 From: Matthew Pharr Date: Wed, 8 Jul 2026 01:54:20 -0400 Subject: [PATCH 5/8] cli: add --data-dir to `magnetics` and `magnetics-fetch` A --data-dir flag sets MAGNETICS_DATA_DIR for the run, so non-developers can choose where shot data lands without touching env vars. On a cluster this points at scratch/project space instead of the quota'd home dir. The flag is applied before any code resolves h5source.data_dir(); toksearch's default output path is recomputed at fetch time (not from the import-time DATA_DIR) so a late override still takes effect. Co-Authored-By: Claude Opus 4.8 (1M context) --- src/magnetics/cli.py | 13 +++++++++++++ src/magnetics/data/fetch/toksearch.py | 18 ++++++++++++++++-- tests/test_cli.py | 18 ++++++++++++++++++ 3 files changed, 47 insertions(+), 2 deletions(-) diff --git a/src/magnetics/cli.py b/src/magnetics/cli.py index b416964..da0586c 100644 --- a/src/magnetics/cli.py +++ b/src/magnetics/cli.py @@ -14,10 +14,12 @@ from __future__ import annotations import argparse +import os import socket import threading import time import webbrowser +from pathlib import Path def _free_port(host: str, start: int = 8000, tries: int = 100) -> int: @@ -52,8 +54,19 @@ def main(argv: list[str] | None = None) -> int: action="store_true", help="do not open a web browser (e.g. headless server)", ) + ap.add_argument( + "--data-dir", + default=None, + help="shot data directory (sets MAGNETICS_DATA_DIR for this run; overrides " + "the per-user default). On a cluster, point this at scratch/project space.", + ) args = ap.parse_args(argv) + # --data-dir wins over the environment for this run. Set it before importing + # the service, which resolves h5source.data_dir() during import. + if args.data_dir: + os.environ["MAGNETICS_DATA_DIR"] = str(Path(args.data_dir).expanduser().resolve()) + # Deferred so `magnetics --help` stays fast and needs no heavy imports. import uvicorn diff --git a/src/magnetics/data/fetch/toksearch.py b/src/magnetics/data/fetch/toksearch.py index a997118..54d6ab4 100644 --- a/src/magnetics/data/fetch/toksearch.py +++ b/src/magnetics/data/fetch/toksearch.py @@ -44,6 +44,7 @@ import argparse import contextlib import hashlib +import os import socket import subprocess import sys @@ -1337,8 +1338,10 @@ def fetch_shot( except ImportError: backend = "mdsthin" - # Default output lives under data/datafile/; honor an explicit --out as given. - out_path = Path(out) if out else DATA_DIR / f"shot_{shot}.h5" + # Default output lives under /datafile/; honor an explicit --out as + # given. Recomputed here (not the import-time DATA_DIR) so a late + # $MAGNETICS_DATA_DIR / --data-dir override still lands in the right place. + out_path = Path(out) if out else h5source.data_dir() / "datafile" / f"shot_{shot}.h5" out_path.parent.mkdir(parents=True, exist_ok=True) out = str(out_path) @@ -1653,6 +1656,12 @@ def main(argv=None) -> int: "ssh-config alias already sets User", ) ap.add_argument("--out", default=None, help="output .h5 (default shot_.h5)") + ap.add_argument( + "--data-dir", + default=None, + help="shot data directory (sets MAGNETICS_DATA_DIR for this run; overrides " + "the per-user default). On a cluster, point this at scratch/project space.", + ) ap.add_argument( "--force", action="store_true", @@ -1686,6 +1695,11 @@ def main(argv=None) -> int: ) args = ap.parse_args(argv) + # --data-dir wins over the environment for this run; set it before any code + # resolves h5source.data_dir() so the shot lands in the requested directory. + if args.data_dir: + os.environ["MAGNETICS_DATA_DIR"] = str(Path(args.data_dir).expanduser().resolve()) + fetch_shot( args.shot, args.analysis, diff --git a/tests/test_cli.py b/tests/test_cli.py index 9f1137f..566cfef 100644 --- a/tests/test_cli.py +++ b/tests/test_cli.py @@ -2,6 +2,7 @@ from __future__ import annotations +import os import socket import pytest @@ -42,6 +43,23 @@ def test_data_dir_env_override(tmp_path, monkeypatch): assert h5source.data_dir() == (tmp_path / "shots").resolve() +def test_fetch_cli_data_dir_sets_env(tmp_path, monkeypatch): + # `magnetics-fetch --data-dir X` must set MAGNETICS_DATA_DIR before fetching so + # the shot lands in X. Stub fetch_shot so we assert the env without a real pull. + from magnetics.data.fetch import toksearch + + monkeypatch.delenv("MAGNETICS_DATA_DIR", raising=False) + seen = {} + + def fake_fetch_shot(*args, **kwargs): + seen["data_dir"] = os.environ.get("MAGNETICS_DATA_DIR") + + monkeypatch.setattr(toksearch, "fetch_shot", fake_fetch_shot) + toksearch.main(["--shot", "1", "--data-dir", str(tmp_path / "scratch")]) + assert seen["data_dir"] == str((tmp_path / "scratch").resolve()) + assert h5source.data_dir() == (tmp_path / "scratch").resolve() + + def test_data_dir_source_checkout(monkeypatch): # In this repo checkout (pyproject.toml + gui/ both present), data_dir() is # the repo's data/ dir, not the per-user fallback. From 7e0d8a409ddad18bc382c86be088fda55eccac6d Mon Sep 17 00:00:00 2001 From: Matthew Pharr Date: Wed, 8 Jul 2026 01:55:36 -0400 Subject: [PATCH 6/8] docs: README quick start for non-developer users MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Document `uvx magnetics` / `pip install magnetics` + `magnetics` as the one-command install-and-run path, the --port/--no-browser/--data-dir flags, the magnetics-fetch/magnetics-service scripts, and where shot data is cached (incl. the cluster → MAGNETICS_DATA_DIR=scratch pattern). Keep the dev setup and point to docs/RELEASING.md. Co-Authored-By: Claude Opus 4.8 (1M context) --- README.md | 70 ++++++++++++++++++++++++++++++++++++++++++++++++------- 1 file changed, 62 insertions(+), 8 deletions(-) diff --git a/README.md b/README.md index 4064a91..58ff40a 100644 --- a/README.md +++ b/README.md @@ -1,24 +1,78 @@ -# magnetics (analysis) +# magnetics -Device-agnostic Python library for 3D magnetic-sensor analysis of tokamak MHD -instabilities. See `../docs/VISION.md` for context. +Device-agnostic Python library **and** GUI for 3D magnetic-sensor analysis of +tokamak MHD instabilities — quasi-stationary (locked) modes and rapidly-rotating +modes. See [`docs/VISION.md`](docs/VISION.md) for context. -## Setup +## Quick start (no dev setup) + +The GUI ships inside the package — no Node or build toolchain needed. + +```sh +uvx magnetics # zero-install: uv provisions Python + runs it +# or +pip install magnetics # into an existing environment +magnetics # start the app, open it in your browser +``` + +`magnetics` starts the service and opens the GUI in your browser. Useful flags: + +```sh +magnetics --port 8000 # fixed port (default: first free port from 8000) +magnetics --no-browser # headless (e.g. on a server) +magnetics --data-dir PATH # where shot data lives (see below) +``` + +Two more console scripts come with the install: + +```sh +magnetics-fetch --shot 184927 # pull a shot to the local data dir +magnetics-service # start just the API/service (honors HOST/PORT) +``` + +### Where shot data lives + +Fetched shots are cached persistently so you don't re-pull them. The location is, +in order: + +1. `$MAGNETICS_DATA_DIR` (or `--data-dir`) if set — **the** knob to relocate it; +2. the repo's `data/` dir when run from a source checkout; +3. otherwise a per-user data dir (`~/.local/share/magnetics` on Linux, + `~/Library/Application Support/magnetics` on macOS). + +**On a cluster,** set `MAGNETICS_DATA_DIR` to scratch/project space (home dirs are +usually quota'd and shot files are large) — e.g. in your shell profile: + +```sh +export MAGNETICS_DATA_DIR=$SCRATCH/magnetics +``` + +## Development + +The Python project is the repo root (a uv project); the React GUI is in `gui/web/`. ```sh uv sync --group dev uv run nbstripout --install # strip notebook outputs on commit (run once per clone) +./run.sh # live: FastAPI service + GUI dev server (hot reload) +./run.sh static # GUI only, static mock fixtures (offline frontend work) +./run.sh --prod # build the GUI and serve it on one port (like the wheel) ``` -## Layout +### Layout - `src/magnetics/core/` — pure, device-agnostic analysis (e.g. `spectral.py`). -- `tests/` — pytest suite; fixtures in `tests/fixtures/`. +- `src/magnetics/service/` — FastAPI app; the built GUI is bundled at `service/webapp/`. +- `gui/web/` — React + Vite + TypeScript frontend. +- `tests/` — pytest suite (synthetic fixtures; no real tokamak data committed). - `examples/` — runnable Jupyter notebooks. -## Common commands +### Common commands ```sh -uv run pytest # run tests +uv run pytest # run the Python tests uv run jupyter lab examples/ # open the example notebooks +cd gui/web && npm test # run the frontend tests ``` + +Releasing to PyPI is documented in [`docs/RELEASING.md`](docs/RELEASING.md). From 9205cb28d67bea0172e167cfcb391f6c555ef794 Mon Sep 17 00:00:00 2001 From: Matthew Pharr Date: Wed, 8 Jul 2026 02:03:19 -0400 Subject: [PATCH 7/8] tooling: rename run.sh -> run-dev.sh, add scripts/build-dist.sh MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit run.sh only ever ran the dev stack; rename it to run-dev.sh to make room for a distribution builder. scripts/build-dist.sh does the staging dance `uv build` can't: build the GUI, stage it into the package, build the sdist + wheel, verify the GUI/device data are bundled, and (with --smoke) install and boot the wheel in a clean 3.12 venv. The release workflow now calls build-dist.sh so local and CI builds can't drift. Fixes a SIGPIPE in the bundle-verify greps (`… | grep -q` under `set -o pipefail` aborted once grep matched) by capturing the listings first. Updates the run.sh references in the README, CLAUDE.md, and code comments. Co-Authored-By: Claude Opus 4.8 (1M context) --- .github/workflows/release.yml | 38 +++----------------- CLAUDE.md | 2 +- README.md | 9 +++-- gui/web/src/lib/api.ts | 4 +-- run.sh => run-dev.sh | 14 ++++---- scripts/build-dist.sh | 65 +++++++++++++++++++++++++++++++++++ src/magnetics/cli.py | 4 +-- src/magnetics/service/app.py | 4 +-- 8 files changed, 90 insertions(+), 50 deletions(-) rename run.sh => run-dev.sh (83%) create mode 100755 scripts/build-dist.sh diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml index 8643023..73883f8 100644 --- a/.github/workflows/release.yml +++ b/.github/workflows/release.yml @@ -24,17 +24,6 @@ jobs: cache: npm cache-dependency-path: gui/web/package-lock.json - - name: Build GUI (production, same-origin) - working-directory: gui/web - run: | - npm ci - npm run build - - - name: Stage built GUI into the package - run: | - rm -rf src/magnetics/service/webapp - cp -r gui/web/dist src/magnetics/service/webapp - - uses: astral-sh/setup-uv@v5 with: enable-cache: true @@ -48,29 +37,10 @@ jobs: exit 1 fi - - name: Build sdist + wheel - run: uv build - - - name: Verify GUI + device data are bundled - run: | - set -euo pipefail - unzip -l dist/*.whl | grep -q "magnetics/service/webapp/index.html" - unzip -l dist/*.whl | grep -q "magnetics/data/device/diiid.json" - # uv builds the wheel from the sdist, so the sdist must carry the GUI too. - tar -tzf dist/*.tar.gz | grep -q "src/magnetics/service/webapp/index.html" - - - name: Smoke test the wheel (fresh 3.12 venv, non-checkout cwd) - run: | - set -euo pipefail - uv venv --python 3.12 /tmp/smoke - uv pip install --python /tmp/smoke/bin/python dist/*.whl - /tmp/smoke/bin/python -c "import magnetics; print(magnetics.__version__)" - # Launch from /tmp so data_dir() uses the per-user fallback, not the checkout. - ( cd /tmp && /tmp/smoke/bin/magnetics --no-browser --port 8123 ) & - svc=$! - curl -fsS --retry 20 --retry-connrefused --retry-delay 1 http://127.0.0.1:8123/api/machines >/dev/null - curl -fsS http://127.0.0.1:8123/ | grep -qi "&2 + echo "usage: ./run-dev.sh [live | static | --prod]" >&2 exit 2 ;; esac diff --git a/scripts/build-dist.sh b/scripts/build-dist.sh new file mode 100755 index 0000000..a8bf5c7 --- /dev/null +++ b/scripts/build-dist.sh @@ -0,0 +1,65 @@ +#!/usr/bin/env bash +# +# Build the distributable wheel + sdist with the GUI bundled inside the package. +# +# `uv build` alone does NOT build the frontend — the GUI must be compiled and +# staged into src/magnetics/service/webapp/ first, or the wheel ships with no UI. +# This script does the staging dance, builds both artifacts, and verifies the GUI +# and device data actually made it in. This mirrors .github/workflows/release.yml. +# +# scripts/build-dist.sh # build into ./dist +# scripts/build-dist.sh --smoke # also install the wheel in a temp venv and boot it +# +# Prereqs: Node.js 22 + uv. + +set -euo pipefail +cd "$(dirname "$0")/.." # repo root + +SMOKE=0 +[ "${1:-}" = "--smoke" ] && SMOKE=1 + +echo "▶ building the GUI (production, same-origin)…" +# No VITE_API_BASE on purpose: a production build with none set serves the API at +# same-origin (relative /api/… URLs), which is what the packaged app needs. +( cd gui/web && npm ci && npm run build ) + +echo "▶ staging the built GUI into the package (src/magnetics/service/webapp)…" +rm -rf src/magnetics/service/webapp +cp -r gui/web/dist src/magnetics/service/webapp + +echo "▶ building sdist + wheel (uv build)…" +rm -rf dist +uv build + +echo "▶ verifying the GUI + device data are bundled…" +# Capture the listings first: piping into `grep -q` lets grep close the pipe on +# first match, which SIGPIPEs the producer and trips `set -o pipefail`. +whl_list="$(unzip -l dist/*.whl)" +grep -q "magnetics/service/webapp/index.html" <<<"$whl_list" +grep -q "magnetics/data/device/diiid.json" <<<"$whl_list" +# uv builds the wheel from the sdist, so the sdist must carry the GUI too. +sdist_list="$(tar -tzf dist/*.tar.gz)" +grep -q "src/magnetics/service/webapp/index.html" <<<"$sdist_list" + +echo "" +echo " ✓ built:" +for f in dist/*; do echo " $f"; done + +if [ "$SMOKE" -eq 1 ]; then + echo "" + echo "▶ smoke-testing the wheel in a fresh Python 3.12 venv…" + smoke="$(mktemp -d)" + uv venv --python 3.12 "$smoke/venv" + uv pip install --python "$smoke/venv/bin/python" dist/*.whl + "$smoke/venv/bin/python" -c "import magnetics; print(' import OK:', magnetics.__version__)" + # Launch from a non-checkout dir so data_dir() uses the per-user fallback. + ( cd "$smoke" && "$smoke/venv/bin/magnetics" --no-browser --port 8123 ) & + svc=$! + trap 'kill "$svc" 2>/dev/null || true; rm -rf "$smoke"' EXIT + curl -fsS --retry 20 --retry-connrefused --retry-delay 1 http://127.0.0.1:8123/api/machines >/dev/null + curl -fsS http://127.0.0.1:8123/ | grep -qi " int: - """First free TCP port at/above ``start`` on ``host`` (matches run.sh).""" + """First free TCP port at/above ``start`` on ``host`` (matches run-dev.sh).""" for port in range(start, start + tries): with socket.socket() as s: try: diff --git a/src/magnetics/service/app.py b/src/magnetics/service/app.py index 15edd46..5f05e9e 100644 --- a/src/magnetics/service/app.py +++ b/src/magnetics/service/app.py @@ -395,7 +395,7 @@ def _webapp_dir() -> Path | None: Prefers the copy bundled as package data (``magnetics/service/webapp/``, staged from gui/web/dist at build time) so an installed wheel serves the app; - falls back to the repo's gui/web/dist for a source checkout (run.sh --prod). + falls back to the repo's gui/web/dist for a source checkout (run-dev.sh --prod). """ bundled = resources.files("magnetics.service") / "webapp" if (bundled / "index.html").is_file(): @@ -415,7 +415,7 @@ def main() -> None: """Console entry point: `uv run magnetics-service` (or `magnetics-service`). Honors ``HOST``/``PORT`` env vars (default 127.0.0.1:8000) so several checkouts - can run at once — ``run.sh`` auto-picks a free ``PORT`` and wires the GUI to it. + can run at once — ``run-dev.sh`` auto-picks a free ``PORT`` and wires the GUI to it. """ import os From e1516713f4870c7d23bd2985bcf55854217b0283 Mon Sep 17 00:00:00 2001 From: Matthew Pharr Date: Wed, 8 Jul 2026 02:20:31 -0400 Subject: [PATCH 8/8] docs: document running a built wheel in isolation with uvx Add a README section showing `uvx --from ./dist/*.whl magnetics` to try a freshly built wheel in a throwaway env that touches neither the repo's .venv nor its data/ dir, plus the --data-dir and --reinstall variants. Co-Authored-By: Claude Opus 4.8 (1M context) --- README.md | 13 +++++++++++++ 1 file changed, 13 insertions(+) diff --git a/README.md b/README.md index c40b2e5..8269e29 100644 --- a/README.md +++ b/README.md @@ -62,6 +62,19 @@ scripts/build-dist.sh # build the distributable wheel + sdist (GUI bundl scripts/build-dist.sh --smoke # …and smoke-test the wheel in a clean venv ``` +### Running a built wheel in isolation + +To try a freshly built wheel the way an end user would — in a throwaway +environment that touches neither your `.venv` nor the repo's `data/` — run it with +`uvx --from` (the installed package lives in uv's cache, so it uses the per-user +data dir, not this checkout): + +```sh +uvx --from ./dist/magnetics-*.whl magnetics +uvx --from ./dist/magnetics-*.whl magnetics --data-dir "$(mktemp -d)" # touch nothing persistent +uvx --reinstall --from ./dist/magnetics-*.whl magnetics # after a rebuild at the same version +``` + ### Layout - `src/magnetics/core/` — pure, device-agnostic analysis (e.g. `spectral.py`).