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<li class="chapter" data-level="1" data-path="index.html"><a href="index.html"><i class="fa fa-check"></i><b>1</b> | About</a></li>
<li class="chapter" data-level="2" data-path="data-access.html"><a href="data-access.html"><i class="fa fa-check"></i><b>2</b> | Data Access + Storage</a><ul>
<li class="chapter" data-level="2.1" data-path="data-access.html"><a href="data-access.html#macos-users"><i class="fa fa-check"></i><b>2.1</b> MacOS Users</a></li>
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<li class="chapter" data-level="5.1" data-path="qiime2-workflow.html"><a href="qiime2-workflow.html#import-data"><i class="fa fa-check"></i><b>5.1</b> Import data</a></li>
<li class="chapter" data-level="5.2" data-path="qiime2-workflow.html"><a href="qiime2-workflow.html#demultiplexing"><i class="fa fa-check"></i><b>5.2</b> Demultiplexing</a></li>
<li class="chapter" data-level="5.3" data-path="qiime2-workflow.html"><a href="qiime2-workflow.html#denoising-and-asv-generation"><i class="fa fa-check"></i><b>5.3</b> Denoising and ASV generation</a></li>
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<li class="chapter" data-level="6.1" data-path="quest-tutorial.html"><a href="quest-tutorial.html#getting-acquainted-with-quest"><i class="fa fa-check"></i><b>6.1</b> Getting acquainted with Quest</a></li>
<li class="chapter" data-level="6.2" data-path="quest-tutorial.html"><a href="quest-tutorial.html#using-qiime2-on-quest"><i class="fa fa-check"></i><b>6.2</b> Using Qiime2 on Quest</a></li>
<li class="chapter" data-level="6.3" data-path="quest-tutorial.html"><a href="quest-tutorial.html#best-practices-in-a-shared-computing-environment"><i class="fa fa-check"></i><b>6.3</b> Best practices in a shared computing environment</a></li>
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<li class="chapter" data-level="6.5" data-path="quest-tutorial.html"><a href="quest-tutorial.html#batch-jobs-on-quest"><i class="fa fa-check"></i><b>6.5</b> Batch jobs on Quest</a></li>
<li class="chapter" data-level="6.6" data-path="quest-tutorial.html"><a href="quest-tutorial.html#a-note-on-partitions"><i class="fa fa-check"></i><b>6.6</b> A note on partitions</a></li>
<li class="chapter" data-level="6.7" data-path="quest-tutorial.html"><a href="quest-tutorial.html#more-information"><i class="fa fa-check"></i><b>6.7</b> More information</a></li>
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<li class="chapter" data-level="7" data-path="DAPI.html"><a href="DAPI.html"><i class="fa fa-check"></i><b>7</b> | DAPI + Cell Counting</a><ul>
<li class="chapter" data-level="7.1" data-path="DAPI.html"><a href="DAPI.html#sample-prep"><i class="fa fa-check"></i><b>7.1</b> Sample prep</a></li>
<li class="chapter" data-level="7.2" data-path="DAPI.html"><a href="DAPI.html#operating-the-microscope"><i class="fa fa-check"></i><b>7.2</b> Operating the Microscope</a></li>
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<li class="chapter" data-level="8.2" data-path="submit-sequence-data.html"><a href="submit-sequence-data.html#subission-type"><i class="fa fa-check"></i><b>8.2</b> 1 Subission Type</a></li>
<li class="chapter" data-level="8.3" data-path="submit-sequence-data.html"><a href="submit-sequence-data.html#submitter"><i class="fa fa-check"></i><b>8.3</b> 2 Submitter</a></li>
<li class="chapter" data-level="8.4" data-path="submit-sequence-data.html"><a href="submit-sequence-data.html#sequencing-technology"><i class="fa fa-check"></i><b>8.4</b> 3 Sequencing Technology</a></li>
<li class="chapter" data-level="8.5" data-path="submit-sequence-data.html"><a href="submit-sequence-data.html#sequences"><i class="fa fa-check"></i><b>8.5</b> 4 Sequences</a></li>
<li class="chapter" data-level="8.6" data-path="submit-sequence-data.html"><a href="submit-sequence-data.html#sequence-processing"><i class="fa fa-check"></i><b>8.6</b> 5 Sequence Processing</a></li>
<li class="chapter" data-level="8.7" data-path="submit-sequence-data.html"><a href="submit-sequence-data.html#source-info"><i class="fa fa-check"></i><b>8.7</b> 6 Source Info</a></li>
<li class="chapter" data-level="8.8" data-path="submit-sequence-data.html"><a href="submit-sequence-data.html#bioproject-info"><i class="fa fa-check"></i><b>8.8</b> 7 BioProject Info</a></li>
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<li class="chapter" data-level="8.11" data-path="submit-sequence-data.html"><a href="submit-sequence-data.html#references"><i class="fa fa-check"></i><b>8.11</b> 10 References</a></li>
<li class="chapter" data-level="8.12" data-path="submit-sequence-data.html"><a href="submit-sequence-data.html#review-submit"><i class="fa fa-check"></i><b>8.12</b> 11 Review &amp; Submit</a></li>
<li class="chapter" data-level="8.13" data-path="submit-sequence-data.html"><a href="submit-sequence-data.html#correcting-submission"><i class="fa fa-check"></i><b>8.13</b> Correcting Submission</a></li>
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<li class="chapter" data-level="9" data-path="metabolic.html"><a href="metabolic.html"><i class="fa fa-check"></i><b>9</b> | Functional Gene Annotation with METABOLIC</a></li>
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<div id="data-access" class="section level1">
<h1><span class="header-section-number"> 2</span> | Data Access + Storage</h1>
<p><font size="1"><strong>Created by:</strong> Caitlin Casar on 2019-10-16 </br>
<strong>Last updated:</strong> 2019-10-16 </font></p>
<p>The Osburn Lab data is backed up to <a href="https://www.it.northwestern.edu/research/user-services/storage/research-data.htm">RDSS</a> at Northwestern. You can access this data if you have permissions using the directions here. If you do not currently have access, you will need to be added as a user by Caitlin or Maggie.</p>
<div id="macos-users" class="section level2">
<h2><span class="header-section-number">2.1</span> MacOS Users</h2>
<p>Open Finder and navigate to Go &gt; Connect to Server…</p>
<p><img src="images/rdss-1.png" width="552" /></p>
<p>Add this server address: <a href="smb://resfiles.northwestern.edu/OSBURN_LAB" class="uri">smb://resfiles.northwestern.edu/OSBURN_LAB</a></p>
<p><img src="images/rdss-2.png" width="506" /></p>
<p>Add your netID and password. Finder will automatically open OSBURNLAB in your system Volumes.</p>
<p><img src="images/rdss-3.png" width="720" /></p>
<p>To navigate to the OSBURNLAB dirctory in your terminal:</p>
<div class="sourceCode" id="cb1"><pre class="sourceCode bash"><code class="sourceCode bash"><a class="sourceLine" id="cb1-1" title="1"><span class="bu">cd</span> /Volumes/OSBURN_LAB</a></code></pre></div>
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<h2><span class="header-section-number">2.2</span> Windows Users</h2>
<p>Open windows file explore and add this server address: resfiles.northwestern.edu</p>
<p><img src="images/rdss-4.png" width="574" /></p>
<p>You will be prompted for your user name (netID) and password.
<img src="images/rdss-5.png" width="358" /></p>
<p>The contents of OSBURNLAB is displayed in the window.
<img src="images/rdss-6.png" width="627" /></p>

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