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FastSMC Release Notes

v1.1 (2021-01-20)

Improvements to documentation and default use. No changes to any core functionality.

Breaking changes

  • The hashing functionality, previously named GERMLINE, has been renamed to hashing. This includes the command line flag for turning this behaviour on/off, which is now --hashing.

Other changes

  • --hashing is now ON by default when running the FastSMC executable: previously, --GERMLINE was OFF by default.
  • Extra output, including the IBD segment length, posterior mean, and MAP, are now on by default. This behaviour can be toggled with the flags --segmentLength, --perPairPosteriorMeans, --perPairMAP.
  • An example script has been added to cpp_example/FastSMC_example_multiple_jobs.sh that demonstrates how to run FastSMC with multiple jobs simultaneously.
  • The README has been updated to focus on FastSMC functionality.
  • More robust checking is now used to verify the decoding quantities file is correct before reading it.
  • CMake will now, by default, build in Release mode (giving 03 optimisation on Linux). Previously, Debug was used by default.

v1.0 (2020-09-18)

First public release of FastSMC, with functionality as described and used in this paper.