This software implements the Threads algorithm, described in
Á. F. Gunnarsson, J. Zhu, B. C. Zhang, Z. Tsangalidou, A. Allmont, P. Palamara. A scalable approach for genome-wide inference of ancestral recombination graphs. bioRxiv, 2024.
The user manual for threads can be found here.
Prebuilt CPython wheels are available for Linux (compatible with glibc ≥ 2.28) and macOS (built on macOS 15 for x86_64 and macOS 14 for arm64).
| Platform \ CPython | ≤3.8 | 3.9 | 3.10 | 3.11 | 3.12 | 3.13 | 3.14 |
|---|---|---|---|---|---|---|---|
| Linux x86_64 | ❌ | ✅ | ✅ | ✅ | ✅ | ✅ | ✅ |
| Linux aarch64 | ❌ | ✅ | ✅ | ✅ | ✅ | ✅ | ✅ |
| macOS Intel (x86_64) | ❌ | ✅ | ✅ | ✅ | ✅ | ✅ | ✅ |
| macOS Apple Silicon (arm64) | ❌ | ✅ | ✅ | ✅ | ✅ | ✅ | ✅ |
pip install threads_arg