diff --git a/.github/scripts/smoke_install.sh b/.github/scripts/smoke_install.sh index c5e6a81e..2f25789a 100644 --- a/.github/scripts/smoke_install.sh +++ b/.github/scripts/smoke_install.sh @@ -7,9 +7,9 @@ set -e if [ "$PYTHON_VERSION" = "3.12" ]; then - pip install ./PyAutoConf "./PyAutoFit[optional]" + pip install ./PyAutoNerves "./PyAutoFit[optional]" else - pip install ./PyAutoConf ./PyAutoFit + pip install ./PyAutoNerves ./PyAutoFit fi pip install nautilus-sampler # NSS sampler — searches/nest.py exercises `af.NSS`, which needs the diff --git a/.github/workflows/smoke_tests.yml b/.github/workflows/smoke_tests.yml index e21998bc..2eb2a1e5 100644 --- a/.github/workflows/smoke_tests.yml +++ b/.github/workflows/smoke_tests.yml @@ -11,5 +11,5 @@ jobs: smoke: uses: PyAutoLabs/PyAutoHeart/.github/workflows/smoke-tests.yml@main with: - chain: "PyAutoConf PyAutoFit" + chain: "PyAutoNerves PyAutoFit" secrets: inherit diff --git a/AGENTS.md b/AGENTS.md index a17f6403..d76e7d6b 100644 --- a/AGENTS.md +++ b/AGENTS.md @@ -124,7 +124,7 @@ onto this workspace. PyAutoFit sits near the base of the PyAuto stack (all on the `PyAutoLabs` GitHub org): -- https://github.com/PyAutoLabs/PyAutoConf — configuration handling (the `autoconf` dependency). +- https://github.com/PyAutoLabs/PyAutoNerves — configuration handling (the `autonerves` dependency). - https://github.com/PyAutoLabs/PyAutoFit — this library: model composition + non-linear search. - https://github.com/PyAutoLabs/PyAutoHands — notebook generation + CI. - https://github.com/PyAutoLabs/PyAutoGalaxy — downstream science library built **on** PyAutoFit. @@ -134,7 +134,7 @@ PyAutoFit sits near the base of the PyAuto stack (all on the `PyAutoLabs` GitHub beginners new to the framework. For local development these are typically cloned as siblings of this repo (`../PyAutoFit`, -`../PyAutoConf`, `../PyAutoHands`, …). +`../PyAutoNerves`, `../PyAutoHands`, …). ## Task Workflows diff --git a/config/general.yaml b/config/general.yaml index 08d1bc21..0e1af7ed 100644 --- a/config/general.yaml +++ b/config/general.yaml @@ -41,7 +41,7 @@ test: version: # The compatibility FLOOR: the oldest library release whose API this # workspace's scripts require. Preferred over workspace_version - # (autoconf/workspace.py). Bump DELIBERATELY — only when a script + # (autonerves/workspace.py). Bump DELIBERATELY — only when a script # starts needing new API — never per release. Must always name an # INSTALLABLE (non-yanked) release. minimum_library_version: 2026.7.9.1 diff --git a/notebooks/cookbooks/analysis.ipynb b/notebooks/cookbooks/analysis.ipynb index d6375a52..39a7d635 100644 --- a/notebooks/cookbooks/analysis.ipynb +++ b/notebooks/cookbooks/analysis.ipynb @@ -50,12 +50,12 @@ " import sys\n", "\n", " subprocess.check_call(\n", - " [sys.executable, \"-m\", \"pip\", \"install\", \"autoconf\", \"--no-deps\"]\n", + " [sys.executable, \"-m\", \"pip\", \"install\", \"autonerves\", \"--no-deps\"]\n", " )\n", "except ImportError:\n", " pass\n", "\n", - "from autoconf import setup_colab\n", + "from autonerves import setup_colab\n", "\n", "setup_colab.setup(\"autofit\")" ] diff --git a/notebooks/cookbooks/configs.ipynb b/notebooks/cookbooks/configs.ipynb index bb84d27b..29131e08 100644 --- a/notebooks/cookbooks/configs.ipynb +++ b/notebooks/cookbooks/configs.ipynb @@ -53,12 +53,12 @@ " import sys\n", "\n", " subprocess.check_call(\n", - " [sys.executable, \"-m\", \"pip\", \"install\", \"autoconf\", \"--no-deps\"]\n", + " [sys.executable, \"-m\", \"pip\", \"install\", \"autonerves\", \"--no-deps\"]\n", " )\n", "except ImportError:\n", " pass\n", "\n", - "from autoconf import setup_colab\n", + "from autonerves import setup_colab\n", "\n", "setup_colab.setup(\"autofit\")" ] diff --git a/notebooks/cookbooks/latent_variables.ipynb b/notebooks/cookbooks/latent_variables.ipynb index a8820512..11b52de0 100644 --- a/notebooks/cookbooks/latent_variables.ipynb +++ b/notebooks/cookbooks/latent_variables.ipynb @@ -63,12 +63,12 @@ " import sys\n", "\n", " subprocess.check_call(\n", - " [sys.executable, \"-m\", \"pip\", \"install\", \"autoconf\", \"--no-deps\"]\n", + " [sys.executable, \"-m\", \"pip\", \"install\", \"autonerves\", \"--no-deps\"]\n", " )\n", "except ImportError:\n", " pass\n", "\n", - "from autoconf import setup_colab\n", + "from autonerves import setup_colab\n", "\n", "setup_colab.setup(\"autofit\")" ] diff --git a/notebooks/cookbooks/model.ipynb b/notebooks/cookbooks/model.ipynb index a044fb30..a66ca213 100644 --- a/notebooks/cookbooks/model.ipynb +++ b/notebooks/cookbooks/model.ipynb @@ -82,12 +82,12 @@ " import sys\n", "\n", " subprocess.check_call(\n", - " [sys.executable, \"-m\", \"pip\", \"install\", \"autoconf\", \"--no-deps\"]\n", + " [sys.executable, \"-m\", \"pip\", \"install\", \"autonerves\", \"--no-deps\"]\n", " )\n", "except ImportError:\n", " pass\n", "\n", - "from autoconf import setup_colab\n", + "from autonerves import setup_colab\n", "\n", "setup_colab.setup(\"autofit\")" ] diff --git a/notebooks/cookbooks/model_internal.ipynb b/notebooks/cookbooks/model_internal.ipynb index 16d79061..1afd058d 100644 --- a/notebooks/cookbooks/model_internal.ipynb +++ b/notebooks/cookbooks/model_internal.ipynb @@ -57,12 +57,12 @@ " import sys\n", "\n", " subprocess.check_call(\n", - " [sys.executable, \"-m\", \"pip\", \"install\", \"autoconf\", \"--no-deps\"]\n", + " [sys.executable, \"-m\", \"pip\", \"install\", \"autonerves\", \"--no-deps\"]\n", " )\n", "except ImportError:\n", " pass\n", "\n", - "from autoconf import setup_colab\n", + "from autonerves import setup_colab\n", "\n", "setup_colab.setup(\"autofit\")" ] diff --git a/notebooks/cookbooks/multi_level_model.ipynb b/notebooks/cookbooks/multi_level_model.ipynb index f6ce3593..10224442 100644 --- a/notebooks/cookbooks/multi_level_model.ipynb +++ b/notebooks/cookbooks/multi_level_model.ipynb @@ -55,12 +55,12 @@ " import sys\n", "\n", " subprocess.check_call(\n", - " [sys.executable, \"-m\", \"pip\", \"install\", \"autoconf\", \"--no-deps\"]\n", + " [sys.executable, \"-m\", \"pip\", \"install\", \"autonerves\", \"--no-deps\"]\n", " )\n", "except ImportError:\n", " pass\n", "\n", - "from autoconf import setup_colab\n", + "from autonerves import setup_colab\n", "\n", "setup_colab.setup(\"autofit\")" ] diff --git a/notebooks/cookbooks/multiple_datasets.ipynb b/notebooks/cookbooks/multiple_datasets.ipynb index a2506fb8..f193e790 100644 --- a/notebooks/cookbooks/multiple_datasets.ipynb +++ b/notebooks/cookbooks/multiple_datasets.ipynb @@ -75,12 +75,12 @@ " import sys\n", "\n", " subprocess.check_call(\n", - " [sys.executable, \"-m\", \"pip\", \"install\", \"autoconf\", \"--no-deps\"]\n", + " [sys.executable, \"-m\", \"pip\", \"install\", \"autonerves\", \"--no-deps\"]\n", " )\n", "except ImportError:\n", " pass\n", "\n", - "from autoconf import setup_colab\n", + "from autonerves import setup_colab\n", "\n", "setup_colab.setup(\"autofit\")" ] diff --git a/notebooks/cookbooks/result.ipynb b/notebooks/cookbooks/result.ipynb index a395e31e..cf1b13eb 100644 --- a/notebooks/cookbooks/result.ipynb +++ b/notebooks/cookbooks/result.ipynb @@ -93,12 +93,12 @@ " import sys\n", "\n", " subprocess.check_call(\n", - " [sys.executable, \"-m\", \"pip\", \"install\", \"autoconf\", \"--no-deps\"]\n", + " [sys.executable, \"-m\", \"pip\", \"install\", \"autonerves\", \"--no-deps\"]\n", " )\n", "except ImportError:\n", " pass\n", "\n", - "from autoconf import setup_colab\n", + "from autonerves import setup_colab\n", "\n", "setup_colab.setup(\"autofit\")" ] @@ -731,7 +731,7 @@ "custom files can be written to the `files` folder and become accessible via the database.\n", "\n", "To save the objects in a human readable and loaded .json format, the `data` and `noise_map`, which are natively stored\n", - "as 1D numpy arrays, are converted to a suitable dictionary output format. This uses the **PyAutoConf** method\n", + "as 1D numpy arrays, are converted to a suitable dictionary output format. This uses the **PyAutoNerves** method\n", "`to_dict`." ] }, diff --git a/notebooks/cookbooks/samples.ipynb b/notebooks/cookbooks/samples.ipynb index 4811bf1b..65107314 100644 --- a/notebooks/cookbooks/samples.ipynb +++ b/notebooks/cookbooks/samples.ipynb @@ -67,12 +67,12 @@ " import sys\n", "\n", " subprocess.check_call(\n", - " [sys.executable, \"-m\", \"pip\", \"install\", \"autoconf\", \"--no-deps\"]\n", + " [sys.executable, \"-m\", \"pip\", \"install\", \"autonerves\", \"--no-deps\"]\n", " )\n", "except ImportError:\n", " pass\n", "\n", - "from autoconf import setup_colab\n", + "from autonerves import setup_colab\n", "\n", "setup_colab.setup(\"autofit\")" ] diff --git a/notebooks/cookbooks/search.ipynb b/notebooks/cookbooks/search.ipynb index 15cca580..c943b263 100644 --- a/notebooks/cookbooks/search.ipynb +++ b/notebooks/cookbooks/search.ipynb @@ -58,12 +58,12 @@ " import sys\n", "\n", " subprocess.check_call(\n", - " [sys.executable, \"-m\", \"pip\", \"install\", \"autoconf\", \"--no-deps\"]\n", + " [sys.executable, \"-m\", \"pip\", \"install\", \"autonerves\", \"--no-deps\"]\n", " )\n", "except ImportError:\n", " pass\n", "\n", - "from autoconf import setup_colab\n", + "from autonerves import setup_colab\n", "\n", "setup_colab.setup(\"autofit\")" ] diff --git a/notebooks/features/expectation_propagation.ipynb b/notebooks/features/expectation_propagation.ipynb index 37b41e49..9fae419c 100644 --- a/notebooks/features/expectation_propagation.ipynb +++ b/notebooks/features/expectation_propagation.ipynb @@ -79,12 +79,12 @@ " import sys\n", "\n", " subprocess.check_call(\n", - " [sys.executable, \"-m\", \"pip\", \"install\", \"autoconf\", \"--no-deps\"]\n", + " [sys.executable, \"-m\", \"pip\", \"install\", \"autonerves\", \"--no-deps\"]\n", " )\n", "except ImportError:\n", " pass\n", "\n", - "from autoconf import setup_colab\n", + "from autonerves import setup_colab\n", "\n", "setup_colab.setup(\"autofit\")" ] diff --git a/notebooks/features/graphical_models.ipynb b/notebooks/features/graphical_models.ipynb index 6efbef74..f6652339 100644 --- a/notebooks/features/graphical_models.ipynb +++ b/notebooks/features/graphical_models.ipynb @@ -80,12 +80,12 @@ " import sys\n", "\n", " subprocess.check_call(\n", - " [sys.executable, \"-m\", \"pip\", \"install\", \"autoconf\", \"--no-deps\"]\n", + " [sys.executable, \"-m\", \"pip\", \"install\", \"autonerves\", \"--no-deps\"]\n", " )\n", "except ImportError:\n", " pass\n", "\n", - "from autoconf import setup_colab\n", + "from autonerves import setup_colab\n", "\n", "setup_colab.setup(\"autofit\")" ] diff --git a/notebooks/features/interpolate.ipynb b/notebooks/features/interpolate.ipynb index 09c397e1..ffce9d71 100644 --- a/notebooks/features/interpolate.ipynb +++ b/notebooks/features/interpolate.ipynb @@ -72,12 +72,12 @@ " import sys\n", "\n", " subprocess.check_call(\n", - " [sys.executable, \"-m\", \"pip\", \"install\", \"autoconf\", \"--no-deps\"]\n", + " [sys.executable, \"-m\", \"pip\", \"install\", \"autonerves\", \"--no-deps\"]\n", " )\n", "except ImportError:\n", " pass\n", "\n", - "from autoconf import setup_colab\n", + "from autonerves import setup_colab\n", "\n", "setup_colab.setup(\"autofit\")" ] @@ -354,7 +354,7 @@ "source": [ "__Serialization__\n", "\n", - "The interpolator and model can be serialized to a .json file using **PyAutoConf**'s dedicated serialization methods. \n", + "The interpolator and model can be serialized to a .json file using **PyAutoNerves**'s dedicated serialization methods. \n", "\n", "This means an interpolator can easily be loaded into other scripts." ] diff --git a/notebooks/features/model_comparison.ipynb b/notebooks/features/model_comparison.ipynb index bdc2e260..da062ff4 100644 --- a/notebooks/features/model_comparison.ipynb +++ b/notebooks/features/model_comparison.ipynb @@ -84,12 +84,12 @@ " import sys\n", "\n", " subprocess.check_call(\n", - " [sys.executable, \"-m\", \"pip\", \"install\", \"autoconf\", \"--no-deps\"]\n", + " [sys.executable, \"-m\", \"pip\", \"install\", \"autonerves\", \"--no-deps\"]\n", " )\n", "except ImportError:\n", " pass\n", "\n", - "from autoconf import setup_colab\n", + "from autonerves import setup_colab\n", "\n", "setup_colab.setup(\"autofit\")" ] diff --git a/notebooks/features/search_chaining.ipynb b/notebooks/features/search_chaining.ipynb index fb617036..56f8d163 100644 --- a/notebooks/features/search_chaining.ipynb +++ b/notebooks/features/search_chaining.ipynb @@ -103,12 +103,12 @@ " import sys\n", "\n", " subprocess.check_call(\n", - " [sys.executable, \"-m\", \"pip\", \"install\", \"autoconf\", \"--no-deps\"]\n", + " [sys.executable, \"-m\", \"pip\", \"install\", \"autonerves\", \"--no-deps\"]\n", " )\n", "except ImportError:\n", " pass\n", "\n", - "from autoconf import setup_colab\n", + "from autonerves import setup_colab\n", "\n", "setup_colab.setup(\"autofit\")" ] diff --git a/notebooks/features/search_grid_search.ipynb b/notebooks/features/search_grid_search.ipynb index 80552787..7a7cb2ee 100644 --- a/notebooks/features/search_grid_search.ipynb +++ b/notebooks/features/search_grid_search.ipynb @@ -85,12 +85,12 @@ " import sys\n", "\n", " subprocess.check_call(\n", - " [sys.executable, \"-m\", \"pip\", \"install\", \"autoconf\", \"--no-deps\"]\n", + " [sys.executable, \"-m\", \"pip\", \"install\", \"autonerves\", \"--no-deps\"]\n", " )\n", "except ImportError:\n", " pass\n", "\n", - "from autoconf import setup_colab\n", + "from autonerves import setup_colab\n", "\n", "setup_colab.setup(\"autofit\")" ] diff --git a/notebooks/features/sensitivity_mapping.ipynb b/notebooks/features/sensitivity_mapping.ipynb index 2045afe1..9de263f0 100644 --- a/notebooks/features/sensitivity_mapping.ipynb +++ b/notebooks/features/sensitivity_mapping.ipynb @@ -80,12 +80,12 @@ " import sys\n", "\n", " subprocess.check_call(\n", - " [sys.executable, \"-m\", \"pip\", \"install\", \"autoconf\", \"--no-deps\"]\n", + " [sys.executable, \"-m\", \"pip\", \"install\", \"autonerves\", \"--no-deps\"]\n", " )\n", "except ImportError:\n", " pass\n", "\n", - "from autoconf import setup_colab\n", + "from autonerves import setup_colab\n", "\n", "setup_colab.setup(\"autofit\")" ] diff --git a/notebooks/features/shared_analysis_state.ipynb b/notebooks/features/shared_analysis_state.ipynb index 717b57c3..b8d8f1a6 100644 --- a/notebooks/features/shared_analysis_state.ipynb +++ b/notebooks/features/shared_analysis_state.ipynb @@ -88,12 +88,12 @@ " import sys\n", "\n", " subprocess.check_call(\n", - " [sys.executable, \"-m\", \"pip\", \"install\", \"autoconf\", \"--no-deps\"]\n", + " [sys.executable, \"-m\", \"pip\", \"install\", \"autonerves\", \"--no-deps\"]\n", " )\n", "except ImportError:\n", " pass\n", "\n", - "from autoconf import setup_colab\n", + "from autonerves import setup_colab\n", "\n", "setup_colab.setup(\"autofit\")" ] diff --git a/notebooks/overview/overview_1_the_basics.ipynb b/notebooks/overview/overview_1_the_basics.ipynb index ff5fae0b..06473a54 100644 --- a/notebooks/overview/overview_1_the_basics.ipynb +++ b/notebooks/overview/overview_1_the_basics.ipynb @@ -75,12 +75,12 @@ " import sys\n", "\n", " subprocess.check_call(\n", - " [sys.executable, \"-m\", \"pip\", \"install\", \"autoconf\", \"--no-deps\"]\n", + " [sys.executable, \"-m\", \"pip\", \"install\", \"autonerves\", \"--no-deps\"]\n", " )\n", "except ImportError:\n", " pass\n", "\n", - "from autoconf import setup_colab\n", + "from autonerves import setup_colab\n", "\n", "setup_colab.setup(\"autofit\")" ] diff --git a/notebooks/overview/overview_2_scientific_workflow.ipynb b/notebooks/overview/overview_2_scientific_workflow.ipynb index 0c83cdfa..9f4c1459 100644 --- a/notebooks/overview/overview_2_scientific_workflow.ipynb +++ b/notebooks/overview/overview_2_scientific_workflow.ipynb @@ -75,12 +75,12 @@ " import sys\n", "\n", " subprocess.check_call(\n", - " [sys.executable, \"-m\", \"pip\", \"install\", \"autoconf\", \"--no-deps\"]\n", + " [sys.executable, \"-m\", \"pip\", \"install\", \"autonerves\", \"--no-deps\"]\n", " )\n", "except ImportError:\n", " pass\n", "\n", - "from autoconf import setup_colab\n", + "from autonerves import setup_colab\n", "\n", "setup_colab.setup(\"autofit\")" ] diff --git a/notebooks/overview/overview_3_statistical_methods.ipynb b/notebooks/overview/overview_3_statistical_methods.ipynb index 61c56d8e..eac1fe50 100644 --- a/notebooks/overview/overview_3_statistical_methods.ipynb +++ b/notebooks/overview/overview_3_statistical_methods.ipynb @@ -156,12 +156,12 @@ " import sys\n", "\n", " subprocess.check_call(\n", - " [sys.executable, \"-m\", \"pip\", \"install\", \"autoconf\", \"--no-deps\"]\n", + " [sys.executable, \"-m\", \"pip\", \"install\", \"autonerves\", \"--no-deps\"]\n", " )\n", "except ImportError:\n", " pass\n", "\n", - "from autoconf import setup_colab\n", + "from autonerves import setup_colab\n", "\n", "setup_colab.setup(\"autofit\")" ] diff --git a/notebooks/plot/dynesty_plotter.ipynb b/notebooks/plot/dynesty_plotter.ipynb index 8ecab8d5..df225976 100644 --- a/notebooks/plot/dynesty_plotter.ipynb +++ b/notebooks/plot/dynesty_plotter.ipynb @@ -47,12 +47,12 @@ " import sys\n", "\n", " subprocess.check_call(\n", - " [sys.executable, \"-m\", \"pip\", \"install\", \"autoconf\", \"--no-deps\"]\n", + " [sys.executable, \"-m\", \"pip\", \"install\", \"autonerves\", \"--no-deps\"]\n", " )\n", "except ImportError:\n", " pass\n", "\n", - "from autoconf import setup_colab\n", + "from autonerves import setup_colab\n", "\n", "setup_colab.setup(\"autofit\")" ] diff --git a/notebooks/plot/emcee_plotter.ipynb b/notebooks/plot/emcee_plotter.ipynb index bca05fef..17e199e5 100644 --- a/notebooks/plot/emcee_plotter.ipynb +++ b/notebooks/plot/emcee_plotter.ipynb @@ -46,12 +46,12 @@ " import sys\n", "\n", " subprocess.check_call(\n", - " [sys.executable, \"-m\", \"pip\", \"install\", \"autoconf\", \"--no-deps\"]\n", + " [sys.executable, \"-m\", \"pip\", \"install\", \"autonerves\", \"--no-deps\"]\n", " )\n", "except ImportError:\n", " pass\n", "\n", - "from autoconf import setup_colab\n", + "from autonerves import setup_colab\n", "\n", "setup_colab.setup(\"autofit\")" ] diff --git a/notebooks/plot/get_dist.ipynb b/notebooks/plot/get_dist.ipynb index 70687113..1314ce15 100644 --- a/notebooks/plot/get_dist.ipynb +++ b/notebooks/plot/get_dist.ipynb @@ -68,12 +68,12 @@ " import sys\n", "\n", " subprocess.check_call(\n", - " [sys.executable, \"-m\", \"pip\", \"install\", \"autoconf\", \"--no-deps\"]\n", + " [sys.executable, \"-m\", \"pip\", \"install\", \"autonerves\", \"--no-deps\"]\n", " )\n", "except ImportError:\n", " pass\n", "\n", - "from autoconf import setup_colab\n", + "from autonerves import setup_colab\n", "\n", "setup_colab.setup(\"autofit\")" ] diff --git a/notebooks/plot/nautilus_plotter.ipynb b/notebooks/plot/nautilus_plotter.ipynb index a66cb143..e0d8ae3d 100644 --- a/notebooks/plot/nautilus_plotter.ipynb +++ b/notebooks/plot/nautilus_plotter.ipynb @@ -47,12 +47,12 @@ " import sys\n", "\n", " subprocess.check_call(\n", - " [sys.executable, \"-m\", \"pip\", \"install\", \"autoconf\", \"--no-deps\"]\n", + " [sys.executable, \"-m\", \"pip\", \"install\", \"autonerves\", \"--no-deps\"]\n", " )\n", "except ImportError:\n", " pass\n", "\n", - "from autoconf import setup_colab\n", + "from autonerves import setup_colab\n", "\n", "setup_colab.setup(\"autofit\")" ] diff --git a/notebooks/plot/zeus_plotter.ipynb b/notebooks/plot/zeus_plotter.ipynb index 6419c73c..95223955 100644 --- a/notebooks/plot/zeus_plotter.ipynb +++ b/notebooks/plot/zeus_plotter.ipynb @@ -46,12 +46,12 @@ " import sys\n", "\n", " subprocess.check_call(\n", - " [sys.executable, \"-m\", \"pip\", \"install\", \"autoconf\", \"--no-deps\"]\n", + " [sys.executable, \"-m\", \"pip\", \"install\", \"autonerves\", \"--no-deps\"]\n", " )\n", "except ImportError:\n", " pass\n", "\n", - "from autoconf import setup_colab\n", + "from autonerves import setup_colab\n", "\n", "setup_colab.setup(\"autofit\")" ] diff --git a/notebooks/searches/mcmc.ipynb b/notebooks/searches/mcmc.ipynb index f2bf6d3e..26352fa1 100644 --- a/notebooks/searches/mcmc.ipynb +++ b/notebooks/searches/mcmc.ipynb @@ -58,12 +58,12 @@ " import sys\n", "\n", " subprocess.check_call(\n", - " [sys.executable, \"-m\", \"pip\", \"install\", \"autoconf\", \"--no-deps\"]\n", + " [sys.executable, \"-m\", \"pip\", \"install\", \"autonerves\", \"--no-deps\"]\n", " )\n", "except ImportError:\n", " pass\n", "\n", - "from autoconf import setup_colab\n", + "from autonerves import setup_colab\n", "\n", "setup_colab.setup(\"autofit\")" ] diff --git a/notebooks/searches/mle.ipynb b/notebooks/searches/mle.ipynb index 65e4ccdb..019cf47d 100644 --- a/notebooks/searches/mle.ipynb +++ b/notebooks/searches/mle.ipynb @@ -60,12 +60,12 @@ " import sys\n", "\n", " subprocess.check_call(\n", - " [sys.executable, \"-m\", \"pip\", \"install\", \"autoconf\", \"--no-deps\"]\n", + " [sys.executable, \"-m\", \"pip\", \"install\", \"autonerves\", \"--no-deps\"]\n", " )\n", "except ImportError:\n", " pass\n", "\n", - "from autoconf import setup_colab\n", + "from autonerves import setup_colab\n", "\n", "setup_colab.setup(\"autofit\")" ] diff --git a/notebooks/searches/nest.ipynb b/notebooks/searches/nest.ipynb index 0b6bbc36..fecff417 100644 --- a/notebooks/searches/nest.ipynb +++ b/notebooks/searches/nest.ipynb @@ -59,12 +59,12 @@ " import sys\n", "\n", " subprocess.check_call(\n", - " [sys.executable, \"-m\", \"pip\", \"install\", \"autoconf\", \"--no-deps\"]\n", + " [sys.executable, \"-m\", \"pip\", \"install\", \"autonerves\", \"--no-deps\"]\n", " )\n", "except ImportError:\n", " pass\n", "\n", - "from autoconf import setup_colab\n", + "from autonerves import setup_colab\n", "\n", "setup_colab.setup(\"autofit\")" ] diff --git a/notebooks/searches/start_point.ipynb b/notebooks/searches/start_point.ipynb index 280ae80f..e3133474 100644 --- a/notebooks/searches/start_point.ipynb +++ b/notebooks/searches/start_point.ipynb @@ -89,12 +89,12 @@ " import sys\n", "\n", " subprocess.check_call(\n", - " [sys.executable, \"-m\", \"pip\", \"install\", \"autoconf\", \"--no-deps\"]\n", + " [sys.executable, \"-m\", \"pip\", \"install\", \"autonerves\", \"--no-deps\"]\n", " )\n", "except ImportError:\n", " pass\n", "\n", - "from autoconf import setup_colab\n", + "from autonerves import setup_colab\n", "\n", "setup_colab.setup(\"autofit\")" ] diff --git a/notebooks/simulators/simulators.ipynb b/notebooks/simulators/simulators.ipynb index 40f31827..759fdc9e 100644 --- a/notebooks/simulators/simulators.ipynb +++ b/notebooks/simulators/simulators.ipynb @@ -58,12 +58,12 @@ " import sys\n", "\n", " subprocess.check_call(\n", - " [sys.executable, \"-m\", \"pip\", \"install\", \"autoconf\", \"--no-deps\"]\n", + " [sys.executable, \"-m\", \"pip\", \"install\", \"autonerves\", \"--no-deps\"]\n", " )\n", "except ImportError:\n", " pass\n", "\n", - "from autoconf import setup_colab\n", + "from autonerves import setup_colab\n", "\n", "setup_colab.setup(\"autofit\")" ] diff --git a/notebooks/simulators/simulators_sample.ipynb b/notebooks/simulators/simulators_sample.ipynb index a00ee35e..d9a7cc8d 100644 --- a/notebooks/simulators/simulators_sample.ipynb +++ b/notebooks/simulators/simulators_sample.ipynb @@ -45,12 +45,12 @@ " import sys\n", "\n", " subprocess.check_call(\n", - " [sys.executable, \"-m\", \"pip\", \"install\", \"autoconf\", \"--no-deps\"]\n", + " [sys.executable, \"-m\", \"pip\", \"install\", \"autonerves\", \"--no-deps\"]\n", " )\n", "except ImportError:\n", " pass\n", "\n", - "from autoconf import setup_colab\n", + "from autonerves import setup_colab\n", "\n", "setup_colab.setup(\"autofit\")" ] diff --git a/notebooks/simulators/util.ipynb b/notebooks/simulators/util.ipynb index 3b994c4f..35224f01 100644 --- a/notebooks/simulators/util.ipynb +++ b/notebooks/simulators/util.ipynb @@ -27,12 +27,12 @@ " import sys\n", "\n", " subprocess.check_call(\n", - " [sys.executable, \"-m\", \"pip\", \"install\", \"autoconf\", \"--no-deps\"]\n", + " [sys.executable, \"-m\", \"pip\", \"install\", \"autonerves\", \"--no-deps\"]\n", " )\n", "except ImportError:\n", " pass\n", "\n", - "from autoconf import setup_colab\n", + "from autonerves import setup_colab\n", "\n", "setup_colab.setup(\"autofit\")" ] diff --git a/scripts/cookbooks/result.py b/scripts/cookbooks/result.py index ef047b7c..3692de00 100644 --- a/scripts/cookbooks/result.py +++ b/scripts/cookbooks/result.py @@ -482,7 +482,7 @@ def make_result( custom files can be written to the `files` folder and become accessible via the database. To save the objects in a human readable and loaded .json format, the `data` and `noise_map`, which are natively stored -as 1D numpy arrays, are converted to a suitable dictionary output format. This uses the **PyAutoConf** method +as 1D numpy arrays, are converted to a suitable dictionary output format. This uses the **PyAutoNerves** method `to_dict`. """ diff --git a/scripts/features/interpolate.py b/scripts/features/interpolate.py index 16d48ab3..096856d3 100644 --- a/scripts/features/interpolate.py +++ b/scripts/features/interpolate.py @@ -227,7 +227,7 @@ """ __Serialization__ -The interpolator and model can be serialized to a .json file using **PyAutoConf**'s dedicated serialization methods. +The interpolator and model can be serialized to a .json file using **PyAutoNerves**'s dedicated serialization methods. This means an interpolator can easily be loaded into other scripts. """