train_list and test_list

[quail768]

Hi!
This seems like a cool tool and I'd like to test it on some of my own Xenium data.

Could you please provide some information on what the genes in the train_list and test_list are and how they should be selected?

Thanks!

[quail768]

Hi @Boom5426 just following up if you maybe missed this?

If I want to impute using my own data. I will need to train the model on my data right?

[Boom5426]

Hi, thanks for reaching out. If you need to impute your data, I recommend training on your own data first to achieve better performance.

As for selecting the train_list and test_list, you should first find the common genes between your sc and st datasets. Then, you can simply split them into training and testing sets based on a certain ratio. There aren't many tricks involved here.

[passengeryjy]

@quail768 Hi, Do you know how to obtain the train_list.npy and test_list.npy files?