The procedure runed like this:
GWAS loaded
Genes file loaded
Error in [.data.frame(genes.list, , "Gene_stable_ID") :
undefined columns selected
Calls: [ -> [.data.frame -> which -> [ -> [.data.frame
Execution halted
And the dataframe of my eQTL file looks like this:
gene_id variant_id tss_distance ma_samples ma_count maf pval_nominal slope slope_se
ILMN_1651209 chr1_758351_A_G_b38 0 51 41 0.0973282 0.718617 -0.0858542 0.238008
ILMN_1652459 chr1_758351_A_G_b38 0 51 41 0.0973282 0.828452 -0.0388577 0.179137
ILMN_1652758 chr1_758351_A_G_b38 0 51 41 0.0973282 0.566715 -0.14076 0.245368
I already prepare a new genes annotate file for ILMN_XXXXXX.
Could you help me with this problem, thanks a lotttttttt!
The procedure runed like this:
GWAS loaded
Genes file loaded
Error in
[.data.frame(genes.list, , "Gene_stable_ID") :undefined columns selected
Calls: [ -> [.data.frame -> which -> [ -> [.data.frame
Execution halted
And the dataframe of my eQTL file looks like this:
gene_id variant_id tss_distance ma_samples ma_count maf pval_nominal slope slope_se
ILMN_1651209 chr1_758351_A_G_b38 0 51 41 0.0973282 0.718617 -0.0858542 0.238008
ILMN_1652459 chr1_758351_A_G_b38 0 51 41 0.0973282 0.828452 -0.0388577 0.179137
ILMN_1652758 chr1_758351_A_G_b38 0 51 41 0.0973282 0.566715 -0.14076 0.245368
I already prepare a new genes annotate file for ILMN_XXXXXX.
Could you help me with this problem, thanks a lotttttttt!