Hi everyone,
I'm using the SEURAT example,
I have a Seurat Object that I clustered into 10 clusters (0,1,2,3,4,5,6,7,8,9)
When I run the signal = cell_signaling(data=data,genes=all.genes,cluster=cluster)
I get this:
No such file as table_dge_cluster 1.txt in the cluster-analysis folder
No such file as table_dge_cluster 2.txt in the cluster-analysis folder
No such file as table_dge_cluster 3.txt in the cluster-analysis folder
No such file as table_dge_cluster 4.txt in the cluster-analysis folder
No such file as table_dge_cluster 5.txt in the cluster-analysis folder
No such file as table_dge_cluster 6.txt in the cluster-analysis folder
No such file as table_dge_cluster 7.txt in the cluster-analysis folder
No such file as table_dge_cluster 8.txt in the cluster-analysis folder
No such file as table_dge_cluster 9.txt in the cluster-analysis folder
No such file as table_dge_cluster 10.txt in the cluster-analysis folder
Then the checking for signaling between cell types and then I get nothing significant.
I'm not sure what it means, I followed the steps in the DEMO.
Any idea what to do ?
Thank you for creating this package!
Hi everyone,
I'm using the SEURAT example,
I have a Seurat Object that I clustered into 10 clusters (0,1,2,3,4,5,6,7,8,9)
When I run the signal = cell_signaling(data=data,genes=all.genes,cluster=cluster)
I get this:
No such file as table_dge_cluster 1.txt in the cluster-analysis folder
No such file as table_dge_cluster 2.txt in the cluster-analysis folder
No such file as table_dge_cluster 3.txt in the cluster-analysis folder
No such file as table_dge_cluster 4.txt in the cluster-analysis folder
No such file as table_dge_cluster 5.txt in the cluster-analysis folder
No such file as table_dge_cluster 6.txt in the cluster-analysis folder
No such file as table_dge_cluster 7.txt in the cluster-analysis folder
No such file as table_dge_cluster 8.txt in the cluster-analysis folder
No such file as table_dge_cluster 9.txt in the cluster-analysis folder
No such file as table_dge_cluster 10.txt in the cluster-analysis folder
Then the checking for signaling between cell types and then I get nothing significant.
I'm not sure what it means, I followed the steps in the DEMO.
Any idea what to do ?
Thank you for creating this package!